barSeed - Barley Seed Development Database

Probe CUST_29399_PI390587928

Source Contig U35_4704

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29399_PI390587928	Hv_44K_v2	ATGGCTTACCATCATCATCCTGGTAGAGTCTGAAGTTGCATGCAGATCTCCCTTAAAAAA	955	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.357	1.249	1.178	1.002	0.439	0.330
Raw	819.858	1244.070	997.517	1330.250	198.598	167.365

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC11661	1026	3e-25	956 - 1015	100	60 / 60	plus	ABC11661
Harvest35	U35_4704	1026	3e-25	956 - 1015	100	60 / 60	plus

Contig Sequence (1026 bp)

>U35_4704 1026 Hv_44K_v2
CCCGACCCACCGTGCGGCACCGTCTTCTGCTCTCAGTCTCCCGACATCCCGCCCCCTCGC
CCTACCCTAGCCCGATCCAACGCGGCTCCAGTGCCACCGCCGTGCCCTAACCTCTCCTCC
GCGGCTCCCTACCCGTCGCCGCCCCACACCCCTCCGCCTTTCACGCGAGTCGCCGTCGCC
GCCCCACACCCCTCTACCTTTCACGCGAGTCGCCCTGCCGTCCCAACCCCGTCCGCGATT
TCGGCCATCGGTTTCTGAGGTTTGTGCATTCCAAAGCCAGCTCTAGGACACCCCTTGTGA
CAGCATGCCTAAGATAAAGACAAGCCGTGTCGAATATCCTGAAGGATGGGCGCTTATTGA
ACCCACAATCCGTGAGCTGGATGCCAAAATGAGAGAAGCTGAAAACGATACACATGACGG
GAAGAGGAAGTGTGAAGCACTCTGGCCAATTTTCCGCATTTCTCATCAAAGGAGTCGTTA
CATATATGATCTTTTCTATAGAAGGAAGGAAATATCAAAGGAGCTCTATGAGTTCTGCCT
GGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGCCGGGCTACGAGCG
CCTCTGCTGCCTCCGCTGCATCCAGACCCGAGACCACAACTTTGCGACGACGTGCGTGTG
CCGGGTCCCCAAGCACCTGAGGGAGGAGCAGGTGATCGAATGTGTTCACTGTGGCTGCAA
GGGATGTGCCAGCGGCGACTAACTGACTGATTATGCGTCAGTGGAATCCATGGTGGTTCT
AAACCAAACACTCTAGATGTTTCTTAAGCCTTGTCTCAGGCAAGAACAGTCGTCCTGTAA
TGTAAGCACTTGCAGATACCTGTTGCGCGCGCGCGCGCGCGTGTGTGTGTTTGCAATCCT
CTTATCCGGTTTCCTGACATTGGGGGTTAAGGAAACACGCAGTTGCTCCGTGCCCATGGC
TTACCATCATCATCCTGGTAGAGTCTGAAGTTGCATGCAGATCTCCCTTAAAAAAAAAAA
AAAAAA

Homology of Contig U35_4704 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g55290.5	146	2e-104	protein\|G10 protein, putative, expressed
Brachypodium v1_2	Bradi2g55460.1	146	6e-106
Arabidopsis v10	AT4G21110.1	145	4e-97	G10 family protein \| chr4:11267673-11268774 FORWARD LENGTH=145