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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_29389_PI390587928Hv_44K_v2TTTGTTTTGTATTCTCGTTGGAGTTGGCGACCTGCCTGAATTTGCCGTGCTTTGCTTGTT757GeneList: darkmagenta
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 4.5213.1321.3170.6100.1540.158
Raw 3793.3404167.3331530.8031136.339100.445109.999



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_9986.114518e-251356 - 141510060 / 60plus
Harvest35U35_47148713e-25758 - 81710060 / 60plus



Contig Sequence (871 bp)

>U35_4714 871 Hv_44K_v2
TGGATAATACTGTTAAAATCTGGTCAATGAAAGAATTTTGGCCATACAAAATATGTCCTT
TCCACGGACTGACTTCCATCGTGCTTTCCAACAAAATATGTCCAATGTCCAGTGGCTTGG
TGACTTCATCCTGTCGAAGAGTGTTGACAATGAAATTGTTCTGTGGGAGCCAAAAACAAA
AGAACAGGGTGCCGCAGAGGGTAGCATTGATGTCCTTCAGAAGTACCCTGTGCCCGATTG
TGACATTTGGTTTATCAAATTCTCATGTGATTTTCACTTCAATCAATTAGCAATAGGCAA
CCGCGAAGGCAAAATCTATGTGTGGGAAGTGCAGACGAGCCCTCCTGTGCTAATTACCCG
GCTGAGTAGTCCGCAATGCAAAATGCCAATAAGGCAGACTGCAGTGTCGTTTGATGGAAG
CACGATCCTGGCCTGCGGGGAGGATGGCAGCATATACCGCTGGGATGAAGTGGAACATCA
ATCTGTGAAAAATTGAAGGAAGCAAAAACCGCCGTGCCGTGCCATGGCAATGCCAGCCAG
TTTGAACTTGACTTGGGGAGTTGTTGTGTGCTTACTTAGTCGGTTGTACCCATTAGCCTT
ACTTAGCCTGTGACGCCAGAAGCTGGGGTGAATGAGCTTATAATGTCGTAAGTTAGGATG
TTGTTGATTCTATGATTTGCTGGATGTTTCAGTTTGTTACGTTGGCTCTATCATGTACCG
ACTGTGGGAATTATACTTAAAACCTTGTTGCTACTAGTTTGTTTTGTATTCTCGTTGGAG
TTGGCGACCTGCCTGAATTTGCCGTGCTTTGCTTGTTAAAAAAAAAAAAAAACAAAAAAA
AAAAAAACTAACAAAAAAAGCTCGAGGGGGG



Homology of Contig U35_4714 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os08g04270.33777e-73protein|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2Bradi3g14520.23793e-77
Arabidopsis v10AT3G20740.13695e-54| Symbols: FIE, FIS3, FIE1 | Transducin/WD40 repeat-like superfamily protein | chr3:7249064-7252254 REVERSE LENGTH=369