barSeed - Barley Seed Development Database

Probe CUST_29385_PI390587928

Source Contig U35_4718

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29385_PI390587928	Hv_44K_v2	AATTATTATTAGCACAGAGTGTGCAGTGAGACCAGCACCAGTGCAAGTGAGTGAAGTGAC	1311	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.780	1.742	1.248	0.679	0.213	0.171
Raw	284.512	443.567	270.939	238.288	25.483	22.546

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58680.1	4980	2e-24	243 - 302	100	60 / 60	minus	ABC11636
MLOC	MLOC_58681.1	2078	2e-24	245 - 304	100	60 / 60	minus	ABC11636
JLOC1	JLOC1_38140.1	1954	8e-25	118 - 177	100	60 / 60	minus
Harvest35	U35_4718	1399	3e-25	1312 - 1371	100	60 / 60	plus

Contig Sequence (1399 bp)

>U35_4718 1399 Hv_44K_v2
GCCTCAATGCCCTTCAACGCCCTCCTATCGGCCTTCGTCCGGTGCCGCCGCCACCGCCGC
GTCCCTGTCCTCTTCGAGGAGCTCTCCAAGGAGTTCTCCATCACCCCCAACGCCACCTCC
TACGCCATACTGGTGAAGGCTCACTGTATGGTCCGCCATGACGCCAAGGCGCACGAAGTG
ATAGCTCGGATGCGTGAGGAAGGTATCTCGCCGACCACCACCATCTACACCACAATGATC
GATTCCATGTATAAGCAGAAGAAGATAGAGGAGGCCCAGACTTTATGGAAGCAGATGCTG
GAGAGCGGATGCAAGCCGGACCATGCAACATATAATGTGAAGGCCATGCACCACGGACTC
AGTGGCAAGCCGGAAGGTGTTCTCGAGGTTATGGCGGAAATGGAGGCCGATGGAGTAAAG
CCAGACACCATCACCTACAATTTCCTCATGACTGGCTATTGCAAAGTTGGGAAGATGGAG
GATGCCAAAGCGCTGTACCATTTGCTAGGTGACAAAGGGTGCTCGGCAAATGCAGCCACA
TATAAGCACATGCTGGCTGAGCTGTTTGCTCATGGCGATTTTGATGCCGCCTTGGAGGTT
TTCAGGGAAAGCATGAGCAAGCACAAGGTGCCAGACTTTAAGACAATGAAAGGATTTGTT
GAAGGATTAGCAAAGGGAGGCAAGGTGGCTGAGGCGAAGGAGATTATTTACGTGGTGAAG
AAGAAGTTCCCTGATAATATGCTGTCTGGGTGGAAGAAGCTGGAAAAGGAACTTGGGTTC
GGCTCAGATAACGGAGATACAACCCTTCACGCAGAATGTACAGCTGAAGAACCAGTATCT
GAGGCTGAGCCTGCTACCACTGAGCCACTTGAACTCAAAGATTCTGCTGCTGAGGAAACG
GGTGTGTCAGAAGAATCTGATGATGATGAAACGCCTTCACCTGAGACATCCACTGATGAG
GAAGTGCCGCGGGGTCCTGCTTAATTGAAGAATACTGTGTTTCAGTTTGGTTAGAATGTT
TGAATTGAGCGCATTCTTAGCATTGAAGAATCGTTAATGCTGCTTTGGGGAGAGGTAAGC
ACTAGGCCATTCTGGATAAGGACTCTTGGTTGCTAACGTGAATAAGTTGTAGGATTATGT
CACTTCGGAATTAAGAGTTGGCTGTTACTGTGAGCAGTGTGCACGATGTTAGGAGATATT
GTTCTGGTGATACTTGTCTTTAATTAAAATCATTGGGCATTGCCATTTTTGTTGTTATTA
TGGTTTTGTGTATCCAAGTTTACTTTGTATCAATAGTACTATGGATGTCTGAATTATTAT
TAGCACAGAGTGTGCAGTGAGACCAGCACCAGTGCAAGTGAGTGAAGTGACCGATTCACA
CCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4718 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g42210.1	456	8e-144	protein\|membrane-associated salt-inducible protein like, putative, expressed
Brachypodium v1_2	Bradi3g49480.1	469	2e-176
Arabidopsis v10	AT4G36680.1	412	5e-63	Tetratricopeptide repeat (TPR)-like superfamily protein \| chr4:17292479-17293717 REVERSE LENGTH=412