barSeed - Barley Seed Development Database

Probe CUST_29380_PI390587928

Source Contig U35_28252

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29380_PI390587928	Hv_44K_v2	TTGATTCAGCTCCTATTTTCAAGATTCCTGGGAGGCGATACCCTGTTGAAGTTCATTATA	106	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.341	1.148	1.520	0.836	0.753	0.416
Raw	47.400	52.885	73.718	59.668	20.344	12.245

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370650	3662	2e-24	1895 - 1954	100	60 / 60	plus	ABC49714
MLOC	MLOC_5589.3	3274	2e-24	1153 - 1212	100	60 / 60	minus	None
MLOC	MLOC_5589.4	3065	2e-24	937 - 996	100	60 / 60	minus	None
MLOC	MLOC_5589.2	3275	2e-24	1160 - 1219	100	60 / 60	minus	None
MLOC	MLOC_5589.1	3233	2e-24	1180 - 1239	100	60 / 60	minus	None
JLOC1	JLOC1_3605.2	3221	8e-25	1969 - 2028	100	60 / 60	plus
JLOC1	JLOC1_3605.1	3235	8e-25	1983 - 2042	100	60 / 60	plus
Harvest21	ABC27016	166	3e-25	107 - 166	100	60 / 60	plus
Harvest35	U35_28252	166	3e-25	107 - 166	100	60 / 60	plus

Contig Sequence (166 bp)

>U35_28252 166 Hv_44K_v2
GTGTACTGAATCTTGTTTGGTTGGTTAAGGACATTGCTGGTTTCGTCCAGACTGAAGTTG
CTTATTTCAAGTGCAACCCTTGACGCTGAAAAATTTAGCGACTACTTTGATTCAGCTCCT
ATTTTCAAGATTCCTGGGAGGCGATACCCTGTTGAAGTTCATTATA

Homology of Contig U35_28252 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None