barSeed - Barley Seed Development Database

Probe CUST_29378_PI390587928

Source Contig U35_28255

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29378_PI390587928	Hv_44K_v2	TGCTCACCGGCATTTTCGACGGGCACTCTTTTTTCCTTGGATGGATGGATCGGCTACGTG	0	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58872.1	1567	3e-22	1025 - 1083	98	59 / 60	plus	ABC01309 ABC42700
JLOC1	JLOC1_38273.1	1556	1e-22	351 - 409	98	59 / 60	minus
Harvest21	ABC27019	188	3e-25	1 - 60	100	60 / 60	minus
Harvest21	ABC49053	436	5e-23	31 - 89	98	59 / 60	minus
Harvest21	ABC01316	1197	5e-23	33 - 91	98	59 / 60	minus
Harvest35	U35_28255	188	3e-25	1 - 60	100	60 / 60	minus
Harvest35	U35_14114	1222	5e-23	44 - 102	98	59 / 60	minus

Contig Sequence (188 bp)

>U35_28255 188 Hv_44K_v2
CACGTAGCCGATCCATCCATCCAAGGAAAAAAGAGTGCCCGTCGAAAATGCCGGTGAGCA
GGATCGCCATCGGCGCCCCGGGGGAGCTGTCCCACCCGGACACCTTCCGCGCCGGCGTCA
GTCAGCTTGCCGAAGGCCATGCCGGAGCCGGAGCCGGCGAAGACGAAGATGAGCATGGAT
ATGAACTC

Homology of Contig U35_28255 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None