barSeed - Barley Seed Development Database

Probe CUST_29359_PI390587928

Source Contig U35_30578

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29359_PI390587928	Hv_44K_v2	ACGAAGGAGGAGACCTCTCTCTCTCTCTCTCGCGCGCGCGTCTTTGTCGTCAGTCGTCTC	33	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356833	1784	7e-23	25 - 84	98	59 / 60	plus	ABC15956
Harvest21	ABC30556	406	3e-25	34 - 93	100	60 / 60	plus
Harvest35	U35_30578	406	3e-25	34 - 93	100	60 / 60	plus

Contig Sequence (406 bp)

>U35_30578 406 Hv_44K_v2
GCGCGGCGAAAGCAACGGACGACGGAGCACGGGACGAAGGAGGAGACCTCTCTCTCTCTC
TCTCGCGCGCGCGTCTTTGTCGTCAGTCGTCTCCGCCGATCCTCGCCCCGTGCCCCGAAG
CGCGCGGAAGCAGGCCGGAACCGGAAGCTTCGCGCACGGGCCGCTGAGGAGGAGGAGGAG
GAGCCTAGAGAGCGCGCGCCGCCGCGGTCGCCGCTCTGCGCCCGCGGGGTCGGCTCGCAC
CGGCATGGTCTTGGCCCCCGCGCGAAGGCACGGGAATGGCCGATAGGGCGGAGGTCGTGG
CCGTCGTGGTCGCCGCCGGCGTAAGCGCGGCGGTGCTCGCGGCGGCGTGCGTGTTCCTCG
CCATCTGGATGTACCGGCGGCGGCGGGCCAGCGTCGTGGCGCGGAC

Homology of Contig U35_30578 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None