barSeed - Barley Seed Development Database

Probe CUST_29357_PI390587928

Source Contig U35_16286

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29357_PI390587928	Hv_44K_v2	GCCTAGTGATGAATTTCGCAGATGCTCTTCACTTAATTATTTCTATGTTAGACAGTGTTT	2109	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.784	1.844	1.161	0.731	0.296	0.334
Raw	12770.000	20643.123	11409.173	11556.697	1588.757	1969.627

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374404	2234	2e-24	2050 - 2109	100	60 / 60	plus	ABC05134
JLOC1	JLOC1_43601.1	971	8e-25	733 - 792	100	60 / 60	plus
Harvest21	ABC05134	2191	3e-25	2110 - 2169	100	60 / 60	plus	ABC05134
Harvest35	U35_16286	2220	3e-25	2110 - 2169	100	60 / 60	plus

Contig Sequence (2220 bp)

>U35_16286 2220 Hv_44K_v2
CCCTTCTCCTCTCCTCTCTAAAATCCGCCTCTCCCTTCCCCCATTCCCTTTCCTCCTCCC
CAAGAAACAACCAGAGCTCGCACTTCATCTCACCTCGGCGCCTCGCCCCCCTAGCCTCCA
CGCGCCTCGGTCACCGCGCCATCTCGCTGCATTCGCCATGTACCGTGCGGCCGCCAGCCT
CGCCTCCAAGGCTCGGCAAGCCGGGAGCAGCGCTCGCCAGGTTGGAAGCAGGCTTGCCTG
GAGCAGGAACTATGCCGCCAAGGACATCAGGTTTGGTGTTGAGGCCCGTGCTTCGATGTT
GAGGGGTGTTGAGGAGTTGGCAGATGCCGTGAAAGTCACCATGGGTCCCAAGGGGCGCAC
TGTGATCATTGAGCAGAGCTTTGGTGCACCCAAAGTCACGAAGGATGGTGTGACTGTTGC
CAAGAGCATTGAATTTAAGGATAGAGTCAAGAACGTTGGTGCAAGCCTTGTAAAACAGGT
TGCTAATGCAACAAATGATTCTGCTGGAGATGGTACCACTTGCGCTACTGTTTTGACAAA
AGCAATATTTACTGAGGGTTGCAAGTCTGTAGCCGCTGGAATGAACGCAATGGATCTAAG
GCGTGGAATTTCAATGGCGGTCGATGATGTTGTGACAAACCTAAAGGGCATGGCTAGAAT
GATCAGCACTTCAGAGGAAATAGCGCAGGTGGGTACAATATCAGCAAATGGCGAAAGGGA
AATTGGTGAGCTGATTGCGAAGGCTATGGAGAAGGTTGGGAAAGAAGGTGTAATCACCAT
TGCGGATGGTAACACCCTTTATAACGAGCTTGAAGTTGTGGAAGGCATGAAGCTCGACAG
AGGTTACATCTCTCCTTACTTTGTTACCAACCAGAAGACCCAGAAATGTGAATTGGAAGA
CCCCTTGATCTTGATCCATGACAAGAAGGTTTCGAACATGCATGCAGTAGTTAAAGTGTT
AGAGATGGCTCTGAAGAAGCAAAAGCCTCTGCTGATTGTTGCGGAAGATCTAGAAAGCGA
GGCATTGGGCACTCTGATTCTTAACAAGCTCCGTGCAGGCATTAAGGTCTGTGCTGTTAA
AGCTCCTGGTTTTGGGGAGAACAGGAAGGCAAATTTACAGGACCTTGCTATTCTTACTGG
GGGAGAAGTCATAACTGAAGAGCTTGGTATGAACCTTGAGAACTTCGACCCTCAGATGTT
AGGTACATGCAAAAAGGTGACTGTTTCTAAGGATGACACGGTTATTCTTGATGGAGCTGG
AGACAAGAAGAACATTGAAGAGAGAGCAGAGCAGATTAGATCTGCAATTGAGCAAAGCAC
TTCTGATTATGACAAGGAAAAGCTGCAGGAGCGGTTGGCAAAGCTTTCTGGAGGTGTTGC
CGTTCTGAAGATTGGAGGAGCCAGTGAGGCTGAAGTTAGCGAGAAGAAGGACAGAGTTAC
AGATGCACTTAATGCCACTAAAGCTGCTGTTGAAGAGGGTATCGTGCCAGGGGGTGGTGT
TGCCCTTCTATATGCATCAAAGGCTCTGGATAAATTGGAGACTGCAAACTTTGACCAGAA
GATCGGCGTACAAATCATTCAGAATGCTTTGAAGACACCAGTGTACACTATCGCTTCCAA
TGCAGGCGTAGAAGGGGCAGTTGTTGTTGGCAAGCTTTTGGAGCAAGATAACACTGATCT
TGGATATGATGCAGCTAAAGGTGAATATGTTGACATGGTGAAGGTTGGTATCATTGACCC
ACTAAAGGTGATCAGAACTGCCTTGGTGGATGCTGCTAGTGTGTCATCTCTGATGACCAC
AACAGAGGCCATCATCGTAGAGATTCCTAAAGAGGAGAAAGAGGCACCTGGAATGGGCGG
CATGGGTGGAATGGATTACTAATCCATGAATATGCACGATATATGAAGCAAACTGGGACA
TATTAATTAGGGATTTTTTGAGGTGTAGTCCCATCTTTGATGTAATTTTATTGTCGATGG
GGTGACAGTTTTGGTCGTGCGGGCGATGTTCCAAACGGAACTAGTGTTGGGATGAGTGTT
GGGATGAATAAACGATAGTTCTGGAGAGCTGAAACCTGGATCGGAACTGTTTAATGACAC
CTTCTGAAGGCCTAGTGATGAATTTCGCAGATGCTCTTCACTTAATTATTTCTATGTTAG
ACAGTGTTTAACAACTAAAAAAAAAAAAAAAAATTTAGGCCCTGTTGTGAATCAAAAAAA

Homology of Contig U35_16286 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g32550.1	635	protein\|T-complex protein, putative, expressed
Brachypodium v1_2	Bradi3g28070.1	575
Arabidopsis v10	AT3G23990.1	577	\| Symbols: HSP60, HSP60-3B \| heat shock protein 60 \| chr3:8669013-8672278 FORWARD LENGTH=577