barSeed - Barley Seed Development Database

Probe CUST_29348_PI390587928

Source Contig U35_28261

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29348_PI390587928	Hv_44K_v2	TAGACGAGGAGGGACATATTATTCATATTGATTTTGGTTTCATGCTTTCCAACTCTCCTG	544	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58353.1	1540	2e-24	483 - 542	100	60 / 60	plus	ABC18940
MLOC	MLOC_58353.2	1273	2e-24	292 - 351	100	60 / 60	plus	ABC18940
JLOC1	JLOC1_37906.1	1797	8e-25	474 - 533	100	60 / 60	plus
Harvest21	ABC27033	607	3e-25	545 - 604	100	60 / 60	plus
Harvest35	U35_28261	607	3e-25	545 - 604	100	60 / 60	plus

Contig Sequence (607 bp)

>U35_28261 607 Hv_44K_v2
TGCAGGAATTCGGTACGAGGACTGAAAGGAGTTGGTCAAAGCACTCAAAATTTGGATCCT
AAGGCACCTGATGACGGAGATCCTAAACCGACTGATGCTTTGGCTGGTGAACTTTGGACT
GTCAAGAAAGAGAGAATACGCCGTTCTTCAGTTCATGGAAAATTACCTGGCTGGGATTTG
CGTTCTATAATTGTCAAAAGTGGGGATGATTGCCGACAGGAGCACTTAGCCGTACAGCTT
GTCGCACACTTTTATGATATATACCAAGAAGCTGGCTTGCCACTCTGGTTACGGCCTTAT
GAAGTTATCGTCACGTCTGCATATGCAGCCCTAATTGAGACTATTCCTGATACGGCATCA
ATTCATTCCATCAAGAGTAGGTTTCCCAATATATTAAGTCTCCGTGACTACTATGTAGCC
AAGTATGAAGAGAATTCTCCAAATTTCAAACTTGCACAGAGGAACTTTGTGGAAAGCATG
GCAGGATATTCAATTCTGAGCTACCTACTGCAGGTCAAGGATCGTCATAATGGGAATCTG
CTGATAGACGAGGAGGGACATATTATTCATATTGATTTTGGTTTCATGCTTTCCAACTCT
CCTGGAG

Homology of Contig U35_28261 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g10420.1	1209	9e-109	protein\|phosphatidylinositol kinase, putative, expressed
Brachypodium v1_2	Bradi4g22690.1	1206	3e-114
Arabidopsis v10	AT5G64070.1	1121	4e-98	\| Symbols: PI-4KBETA1, PI4KBETA1 \| phosphatidylinositol 4-OH kinase beta1 \| chr5:25637492-25643902 REVERSE LENGTH=1121