barSeed - Barley Seed Development Database

Probe CUST_29341_PI390587928

Source Contig U35_42559

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29341_PI390587928	Hv_44K_v2	AAGGGCTACTCGCGGCCTGCCACTCCGCCTGTGAGCGCCACAGAGAGAAGTGGGTGGAAG	284	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355156	2322	2e-24	662 - 721	100	60 / 60	plus	ABC17381
MLOC	MLOC_62339.4	2179	2e-24	382 - 441	100	60 / 60	plus	ABC17381
MLOC	MLOC_62339.1	2255	2e-24	398 - 457	100	60 / 60	plus	ABC17381
MLOC	MLOC_62339.2	1980	2e-24	398 - 457	100	60 / 60	plus	ABC17381
MLOC	MLOC_62339.3	2075	2e-24	390 - 449	100	60 / 60	plus	ABC17381
JLOC1	JLOC1_40792.5	2268	8e-25	381 - 440	100	60 / 60	plus
JLOC1	JLOC1_40792.4	2410	8e-25	395 - 454	100	60 / 60	plus
JLOC1	JLOC1_40792.3	2008	8e-25	395 - 454	100	60 / 60	plus
JLOC1	JLOC1_40792.2	2005	8e-25	395 - 454	100	60 / 60	plus
JLOC1	JLOC1_40792.1	2407	8e-25	395 - 454	100	60 / 60	plus
Harvest21	ABC38285	344	3e-25	285 - 344	100	60 / 60	plus
Harvest35	U35_42559	344	3e-25	285 - 344	100	60 / 60	plus

Contig Sequence (344 bp)

>U35_42559 344 Hv_44K_v2
GCGCCGCGTCCTCCTCGGCAACGGGCGACGAGCGCCGCGACCTCGCCTGGCTGCTCGAGG
CCTTCGGCAGCGCAACCATCGACCAGGTCGACTCCGCCTACCGCGAGGCCGGCGGCGACC
CCTTCCTTGCGGCCGGCATCCTCGGCTCCACGCAGGACACGCAGCCGCTGCCGCCGCCGC
CGCCAGATCTCTCGCCGCACGCGGGATCTGCTGGGAGGAAGCCGGCTCGCAGGCCCAGGA
AGCTTCCCGTGGCCGCGTCCGGCATCGTTGCGGACGTGATCGGCAAGGGCTACTCGCGGC
CTGCCACTCCGCCTGTGAGCGCCACAGAGAGAAGTGGGTGGAAG

Homology of Contig U35_42559 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None