barSeed - Barley Seed Development Database

Probe CUST_29324_PI390587928

Source Contig U35_16294

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29324_PI390587928	Hv_44K_v2	TAACCACATTCATGGCGGCTTGTATAATCTTTCAAGTTGGCACAATCCAGCATCTGGCCT	741	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55057.1	1908	2e-24	1715 - 1774	100	60 / 60	plus	ABC05143 ABC05144
JLOC1	JLOC1_35486.1	2044	2e-21	1696 - 1755	97	58 / 60	plus
Harvest21	ABC05143	1008	3e-25	208 - 267	100	60 / 60	minus	ABC05143
Harvest35	U35_16294	1011	3e-25	742 - 801	100	60 / 60	plus

Contig Sequence (1011 bp)

>U35_16294 1011 Hv_44K_v2
TCTGTGCCACAAGCCCAAATGACAGTGAATCCTGGGAAATGCATGACGAAATGATAAAAA
ATGCAGAAGATTTTTACAAGGAGATTGGCCTACCATATCAACTAGTTTCCATTGTCTCTG
GTGCACTTAATGATGCTGCAGCTAAGAAGTATGATTTGGAAGCATGGTTCCCTGCTTCAA
AAACATTCAGAGAATTAGTATCCTGTTCAAATTGCACAGATTATCAGGCAAGGAGACTTG
GAATAGGCTATGGCCAGAAAAAGAATGACGAGCAGTCCAAGCAGTTTGTTCATATGTTGA
ATTCTACGCTGACTGCAACTGAGAGGACCCTTTGCTGTATTCTGGAGAACTACCAGAGGA
AGGATGGCGTTGAAGTGCCAAAGGCACTGCAGCCGTTCATGGGTGGGATAGATTTCCTTC
CTTTCAAGCGTCCTCTTGATAGCAAACAAGCTGCTGACTCCAAACCCAACAAGTCTAAAC
CCAAGGGAAATGCAGCTTGAGCTTTAAGAGGGGCGAATGGAAACTTATTTCCATCAGGCA
GATAATGATACATCCTTTTGTTAATTTATGGGTCGTCTGTAGCATGATTATGATTTGGTG
CCCCATTATTTTTAACAAAAGACACCGTGGAGCTATATTTCATTAATGAAGAAGAAGCAG
TGGAGCCGAAGTTACAAAGCTAGGGTATAACCAAATGAAAAAGGGAAACCATCGCCGGCA
ATCGGTCTATACAGCCGGCTATAACCACATTCATGGCGGCTTGTATAATCTTTCAAGTTG
GCACAATCCAGCATCTGGCCTCATCCGCGATTCGACTGAAGATCTGCACGGCAGAGCAGT
TCGAATTGGTTTTCCATTTTGGTTGTTTTGTTTACAAAACATTGCAATCCAGGCTGCCTG
CTCACATTTTACAAGAAAATACATTAGTATCTTCCATAATTGTACTTCATAGTTCATACA
CTCGTTAATCGTTTAAGTTGTCTGGACTTCACTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16294 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g10190.1	446	1e-92	protein\|seryl-tRNA synthetase, putative, expressed
Brachypodium v1_2	Bradi1g71300.1	457	9e-104
Arabidopsis v10	AT5G27470.1	451	3e-78	seryl-tRNA synthetase / serine--tRNA ligase \| chr5:9695087-9697154 FORWARD LENGTH=451