barSeed - Barley Seed Development Database

Probe CUST_29321_PI390587928

Source Contig U35_16296

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29321_PI390587928	Hv_44K_v2	ATACAGCTGGCATCTTCAGAGTCCACCAGTTTTGAAAGATCGAACAGTTCTGTGCCACAA	881	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55057.1	1908	3e-21	926 - 985	97	58 / 60	plus	ABC05143 ABC05144
JLOC1	JLOC1_35486.1	2044	2e-21	907 - 966	97	58 / 60	plus
Harvest35	U35_16296	954	3e-25	882 - 941	100	60 / 60	plus

Contig Sequence (954 bp)

>U35_16296 954 Hv_44K_v2
GCACGCGTAGCCGCCGTCGCGCGAGAAGATGCTCGACATCAACCTCTTCCGCAAGGAGAA
GGGCGGCGACCCTGAGCTTGTCCGCGAATCGCAGCGCAGACGCTTCGCGGACGCCCCCAA
GCCCGAAACATTAGAAAACGCCGTTGCGCTCGTCGACGAGGTCATCGTCCTCGACGAGGC
GTGGCGCCAGAGGCAGTTCGAGCTCGACAAGATCCGCCAGGAGCTCAACAAGACCAGCAA
GGAGATCGGCAAGCTCAAGGCCAAAAAGCAGGATGCGACGGAGCTGATACAGAGCACGGA
GGAGATTAAGAGGAGGCTGGCCGCCAAGGAGACGGAGGTGGAGGAGGCCAAGACCACCCT
CGATGCCAAGCTCGTCACCATTGGCAACCTCGTGCATGATTCTGTGCCCATCAGCGGCGA
CGAGGCAAACAATGCTATTGTCCGGACATGGGGAGAGAGGAGACTGGAGGAGAACTTGAA
GAATCATGTGGATCTTTGCATAATGCTTGACATTGCATCTTTGGACAAGGGTGCCGATGT
AGCTGGTGGAAGAGGTTTCTTTTTGAAGGGCAATGGTGTCCTCCTGAACCAGGCATTGAT
AAATTTTGGCCTAACATTCCTGAGAATACGAGGCTTCACACCAATGCAAACTCCTTTTTT
CATGAGAAAGGAAATCATGGCAAAATGTGCCCAGTTGGCCCAATTTGACGAGGAGCTCTA
CAAAGTAACAGGTGATGGAGACGATAAGTATCTCATAGCTACATCCGAGCAACCACTATG
TGCTTATCATCTGGGTGATCGAATATATCCTGCTGATTTGCCAATTAGATATGCTGGGTT
CTCCACGTGCTTCCGGAAAGAAGCTGGTTCACACGGGAGGGATACAGCTGGCATCTTCAG
AGTCCACCAGTTTTGAAAGATCGAACAGTTCTGTGCCACAAGCCCCAATGACAA

Homology of Contig U35_16296 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g37837.2	401	9e-171	protein\|seryl-tRNA synthetase, putative, expressed
Brachypodium v1_2	Bradi2g08900.1	457	2e-179
Arabidopsis v10	AT5G27470.1	451	4e-139	seryl-tRNA synthetase / serine--tRNA ligase \| chr5:9695087-9697154 FORWARD LENGTH=451