barSeed - Barley Seed Development Database

Probe CUST_29318_PI390587928

Source Contig U35_42560

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29318_PI390587928	Hv_44K_v2	ACAAATCTGTTTGGTGCACTAACACACTATAGTAGTGGACAAGCTGCGGTATATTTTGGA	528	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355461	1987	2e-24	1556 - 1615	100	60 / 60	plus	ABC06252 ABC29924
MLOC	MLOC_1326.2	1178	2e-24	930 - 989	100	60 / 60	plus	ABC29924
MLOC	MLOC_1326.1	1961	2e-24	1539 - 1598	100	60 / 60	plus	ABC29924
JLOC1	JLOC1_815.2	2253	8e-25	1418 - 1477	100	60 / 60	plus
JLOC1	JLOC1_815.1	2644	8e-25	1541 - 1600	100	60 / 60	plus
Harvest21	ABC38289	591	3e-25	529 - 588	100	60 / 60	plus
Harvest35	U35_42560	591	3e-25	529 - 588	100	60 / 60	plus

Contig Sequence (591 bp)

>U35_42560 591 Hv_44K_v2
GATCTTTCCCCCTGAAATAAAGACACACCTGAAGCCCCAGCATTAGCTGCAGAAAAGCTG
AAGCGCATGGGCCCGGTGACTAAGAATGAGTGGGTTATGATTGGTACAATGATTCTTGCA
GTGTCATTATGGGTGTTCGGGGATGCTATTGGTGTATCTAGTGTTGTTGCTGCGATGCTT
GGGCTCTCTATTCTTCTCCTGCTTGGTGTGCTAGACTGGGATGATTGCTTGAGTGAGAAG
TCGGCATGGGATACATTGTCCTGGTTTGCGGTTCTAGTTGCAATGGCGGGACAGCTCACA
AACTTTGGAATCGTGTCGTGGATGTCAACTTCCGTTGCCAAGCTGCTTGAATCTTTCTCA
TTGAGTTGGCCTGCAGCTTTTGTTGTTCTTGAGGCCTCCTACTTCCTCATTCACTATCTA
TTTGCGAGTCAGACGGGGCATGTTGGAGCTCTATACTCTGCGTTTCTAGCTATGCATGTA
GCGGCTGGTGTTCCTCGTGTGCTGTCTGCGCTTGCTTTGGCATTCAGCACAAATCTGTTT
GGTGCACTAACACACTATAGTAGTGGACAAGCTGCGGTATATTTTGGAGCG

Homology of Contig U35_42560 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g29430.1	551	3e-105	protein\|citrate transporter, putative, expressed
Brachypodium v1_2	Bradi4g32730.1	551	9e-103
Arabidopsis v10	AT5G64290.1	563	5e-92	\| Symbols: DCT, DIT2.1 \| dicarboxylate transport 2.1 \| chr5:25714495-25716642 REVERSE LENGTH=563