- Probe CUST_29314_PI390587928
- Source Contig U35_42562
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29314_PI390587928 | Hv_44K_v2 | AAGCTGCAACTCATGCTCATGTTTATTCCCCTCAACGACGAGGACAAACTCGGCCGAAAA | 47 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.232 | 0.427 | 0.881 | 1.478 | 1.381 | 1.413 |
| Raw | 8.084 | 21.902 | 43.908 | 114.828 | 38.026 | 43.164 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_42562 | 107 | 3e-25 | 48 - 107 | 100 | 60 / 60 | plus |
Contig Sequence (107 bp)
>U35_42562 107 Hv_44K_v2 TCGCCTCCCTCTTCCTCTTACCGATCCGCCTCGCCGCGCTGGTGGTGAAGCTGCAACTCA TGCTCATGTTTATTCCCCTCAACGACGAGGACAAACTCGGCCGAAAA
Homology of Contig U35_42562 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |