barSeed - Barley Seed Development Database

Probe CUST_29310_PI390587928

Source Contig U35_42565

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29310_PI390587928	Hv_44K_v2	GCAATAGCACCATGAGAACTATATTAAGGCTCCAATGTATGACTAAAATACCTGGTTTTC	256	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_41497.1	903	2e-24	528 - 587	100	60 / 60	minus	ABC02229 ABC02231 ABC37618
Harvest21	ABC38298	637	3e-25	257 - 316	100	60 / 60	plus
Harvest35	U35_42565	637	3e-25	257 - 316	100	60 / 60	plus

Contig Sequence (637 bp)

>U35_42565 637 Hv_44K_v2
GCCCTGTTTAACTTACTAGTTTCCCCATCTTGAACAAGTAATCAATCACCACATCATTAC
ATATTGATGGAGTAAAAAACACTGAGACTATCTGTAGTCAACAGTTTGTTTGTGGATGTG
TGGGGTACACATGAATATGCATGGTCGTAGTCAAGCATTGCTGACCATCATAACCTTGGG
AGTTCTTTGCTAAGATTTGCTAGTAATGTGCTGTTACTGTCCCCTTTTTGAAGTATCATT
TCTTATCCCATTGTGTGCAATAGCACCATGAGAACTATATTAAGGCTCCAATGTATGACT
AAAATACCTGGTTTTCACTGAACAGGTCCTGTGGCAGAAGATATGTTCCACTGGCAAGCG
ACGATCATGGGTCCATCTGAAAGCCCATATGCTGGTGGTGTATTTTTGGTTACTATTCAC
TTTCCCCCGGACTACCCATTCAAGCCACCCAAGGTATGCAGTCGAGTGTATGCAATGATC
TGAAATTATTCCTAGGAGGATACAACAGTGCTTGCCTTTTCAACTCTCTAGCTCCTTGAG
ATTCCCCGAAGCCCTGTTAAGAAACTTCCTTGCCAACGTCTTGCATTAATGCTCCTAAAA
AAATTATTCAAGCTTAATTACTATAAATCTATCGGAC

Homology of Contig U35_42565 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None