- Probe CUST_29300_PI390587928
- Source Contig U35_28277
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29300_PI390587928 | Hv_44K_v2 | AACGCAACGCAACGCACGCAATAATTACAGCGAACTCTATATCTACGACGCCGTCAGCGC | 622 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK373354 | 1543 | 2e-24 | 1275 - 1334 | 100 | 60 / 60 | plus | ABC01768 ABC01771 ABC01774 |
| MLOC | MLOC_75010.4 | 1314 | 7e-23 | 1106 - 1165 | 98 | 59 / 60 | plus | ABC01768 ABC01771 ABC01774 |
| MLOC | MLOC_75010.2 | 1997 | 7e-23 | 1642 - 1701 | 98 | 59 / 60 | plus | ABC01768 ABC01771 ABC01774 |
| MLOC | MLOC_75010.1 | 3010 | 7e-23 | 2649 - 2708 | 98 | 59 / 60 | plus | ABC01768 ABC01771 ABC01774 |
| JLOC1 | JLOC1_50013.3 | 2084 | 4e-23 | 1689 - 1748 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_50013.1 | 3072 | 4e-23 | 2677 - 2736 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC27055 | 682 | 3e-25 | 623 - 682 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01775 | 577 | 3e-25 | 168 - 227 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC01772 | 1671 | 3e-25 | 1264 - 1323 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01771 | 563 | 1e-23 | 227 - 286 | 98 | 59 / 60 | minus | ABC01771 |
| Harvest35 | U35_28277 | 682 | 3e-25 | 623 - 682 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14660 | 363 | 3e-25 | 137 - 196 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14657 | 1545 | 3e-25 | 1264 - 1323 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14656 | 680 | 3e-25 | 273 - 332 | 100 | 60 / 60 | plus |
Contig Sequence (682 bp)
>U35_28277 682 Hv_44K_v2 GCACCATATGTATCGGAGTACCAGGCCATCGCGAAGCAGAAGCTTCCCAAGATGGCCTAC GACTACTATGCATCCGGGGCGGAGGATGAGTGGACCCTCAAGGAGAACAGGGAGGCATTC TCCAGGATCCTGTTTCGTCCTCGCATACTGATCGACGTGTCGACCATCGACATGACCACA TCTGTCCTGGGAATGAAGATATCCATGCCCATCATCGTGTCCAACCACCATCAGCGCCCT CGAGGAGGTGGTCACGGCCGCCCAGGGACGCATCCCGGTGTACCTCGACGGCGGCGTCCG CCGCGGCACCGACGTCTTCAAGGCGCTCGCCCTCGGCGCCTCCGGCGTCTTCATTGGGCG GCCGGTGGTGTTCGCGCTGGCGGCGGAGGGCGAGGCCGGCGTGAGGAACGTGCTGCGCAT GATGCGGGAGGAGTTCGAGCTCACCATGGCGCTCGGCGGGTGCACCAAGCTCAGCGACAT CACCCGCGAACACATCTTCACCGAGGGCGACCGCCTCGGACGCCCGCTGCCGAGGATGTG ATCAAGAGCCAACGACACACGACGCGCTCATCGCCGTCTCGACGCACGGCCGGGCATATG CATGCTAGCCAGTATCCACCGCAACGCAACGCAACGCACGCAATAATTACAGCGAACTCT ATATCTACGACGCCGTCAGCGC
Homology of Contig U35_28277 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g57220.1 | 370 | 3e-56 | protein|hydroxyacid oxidase 1, putative, expressed |
| Brachypodium v1_2 | Bradi1g06430.1 | 370 | 1e-61 | |
| Arabidopsis v10 | None |