barSeed - Barley Seed Development Database

Probe CUST_2929_PI390587928

Source Contig U35_30617

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2929_PI390587928	Hv_44K_v2	ATGCTGAGCATATTCGATATCTACTTCAAGTCCCCCATCGTCCACGGCATGGCCCCCGTG	181	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367917	3159	2e-24	156 - 215	100	60 / 60	plus	ABC16267
MLOC	MLOC_79851.3	725	2e-24	293 - 352	100	60 / 60	plus	None
MLOC	MLOC_79851.1	707	2e-24	354 - 413	100	60 / 60	plus	None
MLOC	MLOC_79851.2	1227	2e-24	354 - 413	100	60 / 60	plus	None
JLOC1	JLOC1_53171.3	729	8e-25	235 - 294	100	60 / 60	plus
JLOC1	JLOC1_53171.2	755	8e-25	283 - 342	100	60 / 60	plus
JLOC1	JLOC1_53171.1	914	8e-25	283 - 342	100	60 / 60	plus
Harvest21	ABC30612	402	3e-25	182 - 241	100	60 / 60	plus
Harvest35	U35_30617	402	3e-25	182 - 241	100	60 / 60	plus

Contig Sequence (402 bp)

>U35_30617 402 Hv_44K_v2
TTCCCGCTTCCCGTCCCTTCTCAGTCCCAGATCCACCTGACCAGCTCCCTTCGACGGCTC
AGCCGGTGCCCGCCGTGCAATGGCCGGCCGCCCCCGCCCGCAGGCGCACTCGTCGTCCGC
CTCCACGCGGCGGCGCGAGCGGTGGCTGGTCGTCCTCGGCATCGCGCTCCACGCCGTCTA
CATGCTGAGCATATTCGATATCTACTTCAAGTCCCCCATCGTCCACGGCATGGCCCCCGT
GCCGCCCCGCCTCTCCGCGCCCCCCGCCAAGCGCCTCGTCCTCCTTGTTGCGGACGGGCT
CAGGGCGGACAAGTTCTTCGAGCCGGACGAGCGGGGAAGGTACAGGGCACCATTCCTGCG
TGGGGTGATTGAGGAGAAGGGCCGGTGGGGCGTCAGCCACGC

Homology of Contig U35_30617 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g37050.1	914	1e-58	protein\|phosphatidylinositolglycan class N family protein, expressed
Brachypodium v1_2	Bradi3g47034.1	979	1e-58
Arabidopsis v10	None