barSeed - Barley Seed Development Database

Probe CUST_29287_PI390587928

Source Contig U35_28280

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29287_PI390587928	Hv_44K_v2	TTGTTGTAGGCCTTGCTTTGCATCTCATACATGTTTTGGTGTTTCCTCTCAGCCGACGTA	308	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53258.2	1779	2e-24	497 - 556	100	60 / 60	plus	ABC02177 ABC45908
Harvest21	ABC02177	990	3e-25	309 - 368	100	60 / 60	plus	ABC02177
Harvest35	U35_28280	658	3e-25	309 - 368	100	60 / 60	plus

Contig Sequence (658 bp)

>U35_28280 658 Hv_44K_v2
GCAGAGTTGAGCGTGTGGGAGTCGAAGGAGGACATCGAGATGGCCACTGCATATGCTCCT
CCCATGGCGAGCCAGGTGATGAAGAGCGGCTTGGCGTGCTCCAAGCCGCGGGGCATGTCC
GGCGCTTCGCTCACCCGGAGGCCCCGCTTCGTCGTCAAGGCTGTCAAGTCTGACAAGGTC
AGTCGCAAACTTGCAATTGCATGCAAGAGAGAGCTAAAATTAAGGTTTAGCGTGTTGTTT
TTTAGGACGAACAGAGATTTATTCATCCAAAACAAACCACAATTTGTGGGATACAAGTAG
GGTTTAGCTTGTTGTAGGCCTTGCTTTGCATCTCATACATGTTTTGGTGTTTCCTCTCAG
CCGACGTACCAAGTGGTCCAGCCCATCAACGGCGACCCGTTCATCGGCAGCCTGGAGACG
CCGGTCACCTCCAGCCCCCTCGTCGCGTGGTACCTCTCCAACCTCCCCGCCTACCGCACC
GCCGTCAGCCCGCTCCTCCGCGGCATCGAGGTCGGCCTCGCCCATGGCTACCTCCTCGTC
GGCCCCTTCGCGCTCACTGGCCCGCTCCGCAACACGCCCGTGCACGGACAGGCCGGCACA
CTCGGCGCCATCGGACTCGTCTCCATCCTCAGCGTCTGCCTCACCATGTACGGCGTCG

Homology of Contig U35_28280 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g23200.1	209	5e-63	protein\|photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi4g08020.1	210	1e-62
Arabidopsis v10	None