- Probe CUST_29286_PI390587928
- Source Contig U35_28281
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29286_PI390587928 | Hv_44K_v2 | TACTCCTGAAGTCGTACAAACGTCCTATTCCAAGCATTTACAGTACAGTTCTACAAGAAC | 422 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.375 | 0.491 | 1.028 | 1.571 | 1.088 | 1.731 |
| Raw | 15.772 | 25.390 | 59.907 | 143.903 | 35.650 | 61.650 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK358988 | 835 | 7e-23 | 319 - 375 | 100 | 57 / 57 | plus | ABC00320 ABC02155 |
| MLOC | MLOC_65067.2 | 2639 | 7e-23 | 2177 - 2233 | 100 | 57 / 57 | minus | ABC02155 |
| MLOC | MLOC_65067.1 | 1504 | 7e-23 | 948 - 1004 | 100 | 57 / 57 | minus | ABC02155 |
| MLOC | AK251807.1 | 2609 | 3e-21 | 319 - 375 | 98 | 56 / 57 | plus | ABC02155 |
| JLOC1 | JLOC1_42788.2 | 1644 | 4e-23 | 498 - 554 | 100 | 57 / 57 | plus | |
| JLOC1 | JLOC1_42788.1 | 2900 | 4e-23 | 367 - 423 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC27063 | 681 | 3e-25 | 423 - 482 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC47437 | 553 | 1e-23 | 299 - 355 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC02155 | 1359 | 1e-23 | 368 - 424 | 100 | 57 / 57 | plus | ABC02155 |
| Harvest35 | U35_28281 | 681 | 3e-25 | 423 - 482 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_46836 | 553 | 1e-23 | 299 - 355 | 100 | 57 / 57 | plus | |
| Harvest35 | U35_374 | 1359 | 1e-23 | 368 - 424 | 100 | 57 / 57 | plus |
Contig Sequence (681 bp)
>U35_28281 681 Hv_44K_v2 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG GAGTTGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTAAACTGCCTG CTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGG AAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCG TGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTTGTGCTGCTAGGCGAAGCGGTTGAGT GCCGCACCCTAGATGGCTAAAGTCCAGTAGCCGAAAGCATCACTAGCTTATGCTCTGACC CGAGTAGCATGGGGCACGTGGAATCCCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTA AATACTCCTGAAGTCGTACAAACGTCCTATTCCAAGCATTTACAGTACAGTTCTACAAGA ACTTTTGGTGCAGCAACATCTGATGAGATACAAAAGTACGTATCAGTATGATCCTGTGTT TGCTCTTGGATTTGTCACCGTCTATGACCAGCTTATGGAAGGGTACCCCAGCAACGAGGA CAGGGATGCCATCTTCAAGTCATATGTAACGGCGTTAAATGAAGATCCTGAGCAATACAG GGCTGATGCACAAAGGATGGA
Homology of Contig U35_28281 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi1g24860.2 | 257 | 1e-51 | |
| Arabidopsis v10 | None |