- Probe CUST_29281_PI390587928
- Source Contig U35_42579
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29281_PI390587928 | Hv_44K_v2 | GAGGACTATGGCACCTATTGTGGGTCGAACACCATCCCAGTGCCTCGAGCGTTATGAAAA | 262 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.409 | 1.145 | 1.143 | 0.766 | 0.494 | 0.364 |
| Raw | 723.292 | 885.180 | 795.032 | 787.007 | 186.199 | 152.722 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_3083.1 | 383 | 3e-21 | 246 - 305 | 97 | 58 / 60 | plus | None |
| JLOC1 | JLOC1_1853.1 | 214 | 2e-21 | 77 - 136 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC38325 | 322 | 3e-25 | 263 - 322 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_42579 | 322 | 3e-25 | 263 - 322 | 100 | 60 / 60 | plus |
Contig Sequence (322 bp)
>U35_42579 322 Hv_44K_v2 GCAGCGAGGGAGGAGGCAAGATGAGGATCATGATTAAGGGCGGGGTGTGGAAGAACACCG AGGACGAGATCCTCAAGGCCGCCGTGATGAAGTACGGCAAGAACCAGTGGGCGCGCATCT CCTCGCTGCTCGTCCGCAAGTCCGCCAAGCAGTGCAAGGCCCGCTGGTACGAGTGGCTCG ACCCCTCCATCAAGAAGACTGAGTGGACAAGGGAAGAGGATGAGAAGCTGCTTNATCTTG CTAAGCTCATGCCTACTCAGTGGAGGACTATGGCACCTATTGTGGGTCGAACACCATCCC AGTGCCTCGAGCGTTATGAAAA
Homology of Contig U35_42579 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g28090.1 | 973 | 7e-52 | protein|MYB family transcription factor, putative, expressed |
| Brachypodium v1_2 | Bradi4g07110.1 | 983 | 3e-52 | |
| Arabidopsis v10 | AT1G09770.1 | 844 | 3e-52 | | Symbols: ATCDC5, CDC5, ATMYBCDC5 | cell division cycle 5 | chr1:3162002-3165122 FORWARD LENGTH=844 |