barSeed - Barley Seed Development Database

Probe CUST_29279_PI390587928

Source Contig U35_28289

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29279_PI390587928	Hv_44K_v2	AAGCTCTGGACTTGTTTCGAGGGATGCAGAGGGCTGGTTTAAGTATCCATTCTTACACAA	244	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65093.1	3712	3e-21	2850 - 2909	97	58 / 60	minus	ABC49776
JLOC1	JLOC1_42807.1	3477	2e-21	2622 - 2681	97	58 / 60	minus
Harvest21	ABC27078	312	3e-25	245 - 304	100	60 / 60	plus
Harvest35	U35_28289	312	3e-25	245 - 304	100	60 / 60	plus

Contig Sequence (312 bp)

>U35_28289 312 Hv_44K_v2
CGTCGGTACTAGAGGCGTGTGGGATGGAGGGGCATGGGCGTTCCGGACGGCAGAGAGCAT
GGGCTGGCGGTCAAGCACAGGCTTGACGGCAGCACCCTTGTGGCCAATGCGCTCATTGCG
ATCTATGCCAAGTGCGGCATTCTAGATTCTGCGCTGCAGGTGTTCGAGCGGCTGCAAGAC
GGGAGGGATGCCGCATCGTGGAATTCAGTGATGTGGGGGTGTCTGCAGAACTTTTTGTTC
TTGAAAGCTCTGGACTTGTTTCGAGGGATGCAGAGGGCTGGTTTAAGTATCCATTCTTAC
ACAACCGTTGGG

Homology of Contig U35_28289 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None