barSeed - Barley Seed Development Database

Probe CUST_29277_PI390587928

Source Contig U35_42582

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29277_PI390587928	Hv_44K_v2	CGTAACACCTTCTTTTTCCATGATGCGTCAACAGCCACAAAGAAAAGAAATCAGATTAAA	26	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57635.1	4651	2e-24	1676 - 1735	100	60 / 60	plus	ABC38330 ABC39883
MLOC	MLOC_57635.2	4776	2e-24	1801 - 1860	100	60 / 60	plus	ABC38330 ABC39883
JLOC1	JLOC1_37378.1	2541	8e-25	1542 - 1601	100	60 / 60	plus
Harvest21	ABC38330	585	3e-25	27 - 86	100	60 / 60	minus	ABC38330
Harvest35	U35_42582	585	3e-25	27 - 86	100	60 / 60	minus

Contig Sequence (585 bp)

>U35_42582 585 Hv_44K_v2
TTTTTTTTTTTTTTTTTCCAAAGTTTTTTAATCTGATTTCTTTTCTTTGTGGCTGTTGAC
GCATCATGGAAAAAGAAGGTGTTACGGTCCCATGCATAAGTTAGTTTGCATGACAACGTT
GGAGCGAGTAAATCTATTCTTGTTCCACGTTCCACATTGCATCCATTCACACTCGTTGGA
CTCCGATTCGTTTGCGAGACCTCCTACACCGTGCGATGGTGTCACCCGTGTAGTAGGTGG
CCATGGTGTCACCCGTGTAGTAGATGGGTCACGACCCACAAGATAATTTAACAAAGATAC
TTTAAACACCGACCATTGGCTGCCAACAATTGACATATGACCATTGAACGCACACCATTG
ACTTTTGGAAAACCTCATGTTTATTTGCAAGGTTCATTTTTTTTTAAAAGTCATGAAATT
TGAAAAATTACCTGAATTTAAAAACTATGTAAATTTTAAATATTTTATAAAAAATTAAAA
GTCCACAAATTTGAGAATTTTTATTCAAAAACATTTCATATTTTTTTACAAACTTACGAG
TTTTAAAAATGTCCACGAGTTCGGAAAAAGTAAAAATAAAGGAAA

Homology of Contig U35_42582 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None