- Probe CUST_29261_PI390587928
- Source Contig U35_42592
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29261_PI390587928 | Hv_44K_v2 | CTCTTCCTTTTATGCTTGTAGCCAGGGTATTTTGTTTTTTAAAATCGGGTTTGCCTTTAA | 15 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.769 | 1.392 | 1.153 | 0.926 | 0.408 | 0.368 |
| Raw | 6373.397 | 7783.913 | 5762.510 | 7116.893 | 1140.666 | 1095.330 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC38342 | 129 | 3e-25 | 16 - 75 | 100 | 60 / 60 | minus | ABC38342 |
| Harvest35 | U35_42592 | 129 | 3e-25 | 16 - 75 | 100 | 60 / 60 | minus |
Contig Sequence (129 bp)
>U35_42592 129 Hv_44K_v2 TTTTTTTTTTTTTTTTTAAAGGCAAACCCGATTTTAAAAAACAAAATACCCTGGCTACAA GCATAAAAGGAAGAGGCAGCAGCTTTACATTGGGGGTTGCCCATCTCCATACAATAAAAA AGCAATGCA
Homology of Contig U35_42592 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |