barSeed - Barley Seed Development Database

Probe CUST_29254_PI390587928

Source Contig U35_1500

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29254_PI390587928	Hv_44K_v2	TTCCACTGAAAAGGAGAAACTGGAGAAGCCAACGGCGAAACCAGTGAAGATGAAGGTAAT	1155	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355320	1971	2e-24	1595 - 1654	100	60 / 60	plus	ABC01210 ABC04092 ABC04095
MLOC	MLOC_34756.4	1783	2e-24	1356 - 1415	100	60 / 60	plus	ABC01210 ABC04092 ABC04095
MLOC	MLOC_34756.2	1336	2e-24	1235 - 1294	100	60 / 60	plus	ABC01210 ABC04092 ABC04095
MLOC	MLOC_34756.5	1649	2e-24	1300 - 1359	100	60 / 60	plus	ABC01210 ABC04092 ABC04095
MLOC	MLOC_34756.1	1954	2e-24	1471 - 1530	100	60 / 60	plus	ABC01210 ABC04092 ABC04095
JLOC1	JLOC1_22445.5	1982	8e-25	1307 - 1366	100	60 / 60	plus
JLOC1	JLOC1_22445.3	1741	8e-25	1200 - 1259	100	60 / 60	plus
JLOC1	JLOC1_22445.2	1770	8e-25	1233 - 1292	100	60 / 60	plus
JLOC1	JLOC1_22445.1	1818	8e-25	1226 - 1285	100	60 / 60	plus
JLOC1	JLOC1_22445.4	1644	5e-22	1191 - 1245	100	55 / 55	plus
Harvest21	ABC04095	642	3e-25	301 - 360	100	60 / 60	minus	ABC04095
Harvest21	ABC04092	1644	3e-25	1157 - 1216	100	60 / 60	plus	ABC04092
Harvest35	U35_1500	1643	3e-25	1156 - 1215	100	60 / 60	plus

Contig Sequence (1643 bp)

>U35_1500 1643 Hv_44K_v2
CTCCCAGCAGCGGCACGTCGTCCTCTTCCGCCGTCCGCGTGTACGTCCAACAGAGGCTGG
GAACTTTAAAGGGGAACAGGGTTCATGGAGGGTGGAGGCGCAAGAAATGTTTCTGCAGCG
GCAGTACAGACAAAGGGGACTGGGGATGATGGCTCCCGCAAGCCATTGCCTCCTTGCTGT
GTCAAGGCGCAAGCTGCTGTGGCAGAATCTGAGGCCAAGTGCCACGCTACTGTGGTGTCC
GGGTGGTTCACAGGAACCCGCTCGCGCTCTGGTAAACCAAGCAAAGCGCAGTACTTCAAC
AATCCAATGTGGCCTGGGGAGGCTCATTCGTTGAAAGTAGAGAAGATTTTGTACCAGGGA
AAATCGCCATACCAAGAAGTTTTAGTATTCGAGTCTTCAACCTATGGGAATGTCCTTGTG
CTTGATGGAATTGTTCAGCTGACTGACAAGGATGAATGTGCATACCAGGAAATGGTTACT
CACCTTGCACTGTGCTCAATTCCATCTCCTAAAAATGTTTTGGTTGTCGGAGGTGGTGAT
GGTGGTGTACTAAGAGAAATAGCCAAGCATGATTCAGTGGAGAGTATAGACATATGTGAG
ATTGATCAGCTAGTTATTGATGTTTGTAAAGATTTTTTCCCACGTCTATATGTTGGATAT
AAAGACCCTCGTGTCAGACTTCATGTTGGCGATGCTGTAGAGTTCTTGAGAAATTCTCCA
GAAGGAAAATACGATGCCATTATTGTTGATTCATCAGATCCAATTGGGCCAGCCCAGGAA
CTTGTGGAGAAGCCCTTTTTTTCAGGCAATTGCTAGGGCTTTAAAGCCTGGCGGCGTTCT
GTCTAATCTAGCTGAAAGTATGTGGCTGCACACACATCTAATCCAGGATATGCTTTCTAT
CTGTCGGGAGGTATTCAAGGGCGGCGTGCACTATGCCTGGGCAAGTGTTCCAACATATCC
TAGTGGTGTCATCGGATTTTTGCTATGCGCGAAGGAAGGTCCACCGGTGGACTTCTTGAC
TCCTGTGAATCCAATCGAGAAGATTGAAGGAGCTACTAAAGATGGACGAGAGATGAGATT
TTACAATTCAGAGATTCATAGGGCTGCTTTTATTCTGCCAACATTTGTAAAGAGGGAGCT
GGAGGCATATAACACTTCCACTGAAAAGGAGAAACTGGAGAAGCCAACGGCGAAACCAGT
GAAGATGAAGGTAATGCGGGACAGCGCTATCACCGCTTCCTAGACCAGGGACAAACACCC
CTATGTTGTCCATCTTCCCCCACGAGACCCGCCGCGCTGTATATCCACGTTCCACGCCTG
TCCTTTATTACCAAATTTTATTTCAATAGGTACATGATTGTGTGGTGCTGCAGCGTAGTT
GCGTGGCAGAACCGAGAGTAGAGTGTCACTGAGTGTGTATGGTGTGTTGCAGCTAGTGAA
TAAAGGAGCGGACAGAAGGGAATCTGTGATGCGTTACCTGATCTGTGCCATGTACGTATG
ATGTTTCATTGTTACGTGAGCTCTAGTGGTGCAAGTACCAGGACCGGCTATGAGCTTCTG
AAATATCACCTTTGTTCTGAAGTATAAGACGTTTGGGATATTTTTAATATATACAACAGA
ATGATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1500 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g33710.4	372	4e-138	protein\|spermidine synthase, putative, expressed
Brachypodium v1_2	Bradi1g38687.1	385	2e-139
Arabidopsis v10	AT5G53120.6	386	6e-97	\| Symbols: SPDS3 \| spermidine synthase 3 \| chr5:21535429-21537653 FORWARD LENGTH=386