barSeed - Barley Seed Development Database

Probe CUST_29253_PI390587928

Source Contig U35_17905

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29253_PI390587928	Hv_44K_v2	TTGCATTAGCATCCCGACAACTAGCGAAAAATATAGATCACCACAGCCTCAATGAACATG	698	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363542	3278	2e-24	1635 - 1694	100	60 / 60	plus	ABC07972 ABC08350 ABC19912
MLOC	MLOC_31020.1	802	2e-24	217 - 276	100	60 / 60	plus	ABC08350
JLOC1	JLOC1_20442.1	802	8e-25	217 - 276	100	60 / 60	plus
Harvest21	ABC43805	414	3e-25	214 - 273	100	60 / 60	plus
Harvest21	ABC07971	1699	3e-25	699 - 758	100	60 / 60	plus
Harvest35	U35_17905	1699	3e-25	699 - 758	100	60 / 60	plus

Contig Sequence (1699 bp)

>U35_17905 1699 Hv_44K_v2
GCAACCACAGTTGAGGCCGCCGCTAGCACAGCCTGGAATTCAGCTAGCTGGACCTGTTAG
GACTCCTGTCGAGAGCGGGCTTTGTTCTCGAAGGTTAATGCAGTATTTGTATCACAAGCG
TTACCGGCCAGATAATAATCCCATAACATACTGGAGGAAGCTCATTGATGAATATTTTGC
ACCACGATCAAGAGAAAGATGGTGTGTGTCATCATATGAAAAATCAGGGAATACCTCAGC
TGCTATTCCACAGACATCCCCGGGTACATGGCGTTGTGATATTTGTAATACGCATTCGGG
GAAAGGATACGAGGCTACCTCTGAAATACTTCCTAGACTCTGTCAAATTAGATTTGACCA
CGGTGTTAAGGATGAATATCTATTCCTTGACATGCCGAACGAGTTTCGGTTGCCCAACGG
ACTGCTGCTCCTGGAGCATGCTAAAGTTGTTCAGAAGAGCATCTATGAGCACCAACATGT
CACACATGAGGGACAACTGAGAATAATATTCACTCCAGAACTAAAGATTATGTCTTGGGA
GTTTTGTTCACGGAAACACGACGAGTATGTCACCCGCAAGTTTCTAACAGAGCAGGTTAC
ACATATGCTGCGCGCAACCCAGAGTTATCAAGCTACTCTCACTAAAAATGGACCTGCTGG
CCTATCGAACGATGAGGCACAGAACGCTTGCAACCAGTTTGCATTAGCATCCCGACAACT
AGCGAAAAATATAGATCACCACAGCCTCAATGAACATGGTCTTTCTAAAAGATATGTTCG
CTGTTTGCAGATATCAGAGGTGGTGAATCACATGAAGGATCTAATTGAGTTCAGCCACAA
GAACAAGCTCGGTCCTATAGAGGGCCTGAAGAACTATCCCAAACAAACTGCTGGACCAAA
GCTCACGGTGCAGAATTTGCATGACTCAAAGGCAGTCAAAACAGAAATGAGCCCCTATGT
GAATAACGAGGTTCCAGGTGTTGGAGCAATTAGTAATAATCCGCAGAATCCTGCACCACA
AAGCAATTACCAACATATTCTGAGAAGCTCAAGTGCAAATCAGAGTTTGCTTCAGCAAGA
GGCATCACAGAATGCTGCTGCAATGAGCAGTTACCAGAATATGTTTAGAAGCTCAAGCGC
AAATCAAGGTTTGCTCCAGCAGGAGACATCTCAGAATGCTGCTGCGCTAAACAATTACCA
GAATATGCTTAGAGGCTCGAGCCCGAATCAAAGTTTGCTTCAGCAGGAGACATCGAGTAT
CTTCAAAGGTCCTACAGCAGTGCACAGTGGCATTCAGCTGGAAGCATCTAGGTCGTTCCG
TGCGGCTCAGCTTGGGCAATTCCAGCATCCCATGTCGTTCCAGCAAGGTATGCCCCAGCA
CCAGCATAACAATTTCCAAGGCCTGGGCGCTAGTCCACAATTCCAGCAGCATGTGATCAA
TCAGCTGCTGCAAGAAGCCAAGAATACCAATAGCCGCGCTCTTCAGCAGCAGAACCATCA
GCAGCAGCAGAACCATCAGCAGCAGCAGCCGCATCAGCAGCAGAACCATCAGCAGCAGCA
GCAGCAGCAGAACCATCAGCAGCAGCATCAGCAGCAGCATCAGCAGCAGCATCAGCATCA
GCAGCAGCATCATCATCAGCAGCAGCAGCCGCAGCAGCATCAGCAGCAGCAGCAGCATCA
GCATCAACAGCAGCAGCAG

Homology of Contig U35_17905 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g03600.2	776	0.0	protein\|transcriptional corepressor SEUSS, putative, expressed
Brachypodium v1_2	Bradi1g49497.1	815	0.0
Arabidopsis v10	AT5G62090.1	816	4e-103	\| Symbols: SLK2 \| SEUSS-like 2 \| chr5:24935221-24938540 REVERSE LENGTH=816