barSeed - Barley Seed Development Database

Probe CUST_29248_PI390587928

Source Contig U35_17910

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29248_PI390587928	Hv_44K_v2	TCAGTGAAGTCATCATGGACACTGAGGCTCCTATTACTGAATGTTGTTCTGGGCAAAAAA	1310	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.187	1.724	1.189	0.753	0.370	0.386
Raw	7713.080	9629.940	5826.203	5718.913	986.829	1125.711

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250416.1	2666	2e-24	2596 - 2655	100	60 / 60	plus	ABC08108 ABC29965
JLOC1	JLOC1_35127.1	2746	1e-22	2594 - 2649	100	56 / 56	plus
Harvest21	ABC29965	333	3e-25	263 - 322	100	60 / 60	plus	ABC29965
Harvest35	U35_17910	1381	3e-25	1311 - 1370	100	60 / 60	plus

Contig Sequence (1381 bp)

>U35_17910 1381 Hv_44K_v2
GTTGGATGCGCCCTGCACAGGCACTGGAACCGTTTGGAAGGATGCACAAATAAAAACATC
TAAGGACATCGATGACATCAGGAATTGTGCTTTCGTACAAAAGCAATTGCTCCTAGCTGC
TATTGATTTGGTTGACGCCAACTCCAAAACCGGTGGTTACATTGTTTACTCTACTTGTTC
GATGATGATTCCAGAAAATGAAGCAGTCATCGACTATGCCCTTAAAAAGAGAGATGTGAA
GGTTGTTCCTTGTGGATTAGATTTTGGACGCCCAGGATTCATCCGGTTCCGGGAGCATCG
CTTCCATACGTCTTTAGACAAAACAAGGAGGTTTTATCCTCATGTCAACAACATGGATGG
CTTTTTTGTAGCCAAGCTGAAGAAGATGAGCAACACAATTCCAGCATCTTCCGAGTCATC
TAAAGAGCCTGAAGAAGCAGCCGAGGGTGTTGTTGATCCTAACCATGATGAGGAAGATGA
GAAAGATGTTCCTGATAGACAACCCACTAAGTCGAAGAATCATAAACAGGGAAAGAAGAA
AAATGAACAAGCAAGCACCCCTGAAGGCGAGGGAGACCAGAGTCAGGCACCTGAAAGACC
TGCAAAGCAGCTCAAGAACAATAAGGGGGTGAAGAAAAGTAGTGGCCCTAAAAGTGCTGA
AATGAACGGAGATAAGAAAGAAACAGGCAATGAACAAACAGAGCAGGTCAAGAGCCACAA
GGGTTCCAAGAAAATTAAAGGCCCTAAAGATGCTGGAATGGATGTAGATGAGAAAGAAAC
ACCCAGTGAGCAAACAGAGCAGGTCAAGAGCCATAAGGGTGCGAAGAGAAGTAACGGACC
TAAAAGCACTGCAATAAATGGAGAGAAGAAAGATGGGCCCGAGGAACAAACAGAGCAGGC
TAGCCACAAAAAGAAGCCTGCTTCTGATAAAATTAAGAAGTCTGGTTCCAAGAGCGCCTC
AGGGAGTCTGATGAAAGAGAAGAAACCGGTCTCCAAGGAAGGAAACAAGAAAAGGAAATG
GCAATTCAAGCTGAGGCGGGACTGGGAGGCAAAACAGAAGTCGGAGAAGAGGGCGAAGGT
ATGAGAACTGGTGGTTCAAGAGAGCCACATTAGCCTTAGAAGACGAGATTTAAAGTGAAA
CTTGATGTGCTATATATGAAGAAATGTAAAAGGAGCAACTGTACACTCAATTTTGGTCTA
CGTACTTGTGGTGAAGCGAAATTTTGTTGTACGCTGGAGGTGATTGTGTAATCTAATCAC
TATATTTTTGTTTCTCTCTTGGAGAGTATGACCAGTCATTGTAGTTTTTCTCAGTGAAGT
CATCATGGACACTGAGGCTCCTATTACTGAATGTTGTTCTGGGCAAAAAAAAAAAAAAAA
A

Homology of Contig U35_17910 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g49270.1	694	2e-89	protein\|NOL1/NOP2/sun family protein, putative, expressed
Brachypodium v1_2	Bradi3g56470.1	774	2e-152
Arabidopsis v10	AT4G26600.1	671	2e-68	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr4:13419629-13423418 FORWARD LENGTH=671