barSeed - Barley Seed Development Database

Probe CUST_29247_PI390587928

Source Contig U35_17911

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29247_PI390587928	Hv_44K_v2	GTTGTACATTGTTTATTGAGCACTTCGCTTTATGAAATGGCTGAATGTTGCATGTTACTC	0	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.531	1.330	1.004	1.164	0.540	0.807
Raw	1191.087	1676.649	1078.059	2083.261	322.886	519.443

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5883.1	2409	2e-24	982 - 1041	100	60 / 60	minus	ABC25993
JLOC1	JLOC1_3814.1	1373	8e-25	1234 - 1293	100	60 / 60	plus
Harvest21	ABC21712	908	3e-25	849 - 908	100	60 / 60	plus
Harvest35	U35_17911	773	3e-25	1 - 60	100	60 / 60	minus

Contig Sequence (773 bp)

>U35_17911 773 Hv_44K_v2
GAGTAACATGCAACATTCAGCCATTTCATAAAGCGAAGTGCTCAATAAACAATGTACAAC
AGTATGGAATACTCAACTGAGCTATTTCCATGGCAACACTACATGTAGCAGATAAATCCT
CTCCTTTGGAAGAGTTTTGCTGAATCAAATAATCAACCGAAAATGTAAATAGTCTGAATA
TCAGGACAATTCTTGCAGCAATTTCCCCAGCGCATCAGGAACAAGGGGGATGTGGAGGCA
ATCTTGGCCATCAGAGTGCTTTTTGATCTTTATAAGATCATGATCTTTAAATTCTGTCAG
GTGGGAGTTCAATGTCACTTGACTGCTCACCAGGAAACGCTCACGGCATTTGGTATACAA
GCTGCTGTCAGGCATACCTTCCTCTTTTTCATTTGCTAACTGATATTCAGCAAGAACTCT
AAAGACACTTTGTGCATTTGGTGTCAGACTCTGAAGAACAACAAGGGCAGTTTTTGAGCG
GCCGCTAGGAATATCACCCAGACGTGTACTCAATAAGAGCAACCCAGGTTCCTCGAACAT
CAGCTAGTGCAGTAGCATTTGGTTTGGGTCTACTTTCTGGGAAAGGAAAGCTTGGAGCAG
GAAAAAACCGCGCCTTCTCTGTTCTGAGTGAGAGTCGTGCAAGTGATATTTGTCTGCGAT
TCTTCGATAGCTGTAAAACGTACAAGGACTACAGGGAAAGGAAGGAGCCTGATGTTGACA
AACAAAAGGAGCCAATTCTAGAACATGTCACATCTGCTTTAGTCAACCGTTAT

Homology of Contig U35_17911 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g08640.1	380	1e-51	protein\|ORC2 - Putative origin recognition complex subunit 2, expressed
Brachypodium v1_2	Bradi1g72310.4	276	2e-55
Arabidopsis v10	None