barSeed - Barley Seed Development Database

Probe CUST_29244_PI390587928

Source Contig U35_17914

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29244_PI390587928	Hv_44K_v2	ACATGCAGCCTCAGTTATCAGCTCTTATAAGTACAAGTCTATTTTTGGATGCGCAAAAAA	1001	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.701	1.384	1.224	0.852	0.287	0.257
Raw	4009.717	5208.763	3985.587	4401.767	518.660	504.843

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_17914	1072	3e-25	1002 - 1061	100	60 / 60	plus

Contig Sequence (1072 bp)

>U35_17914 1072 Hv_44K_v2
GAAACCTCCACGTGATGTTGAAGCCTACATACATCGGTCAGGTCGGACAGGGAGGGCTGG
CAATACTGGCATTGCAGTCATGCTTTTTGATCCCAGATATAAATTCGGTGTGAGCAGAAT
AGAGAGGGAGTCTGGGGTGAAGTTTGAACATATATCTGCACCGCAGCCTACTGATGTGGC
ACAATCTGCTGGCAATGAAGCAGCAGAGGCCATTTCAAGTGTTTCTGACAGTGTTATTCC
TGTTTTTCGGCAACAAGCAGAGGAACTGCTAAGCTCCTCCAGCATGTCTGCAGTCGATCT
ACTAGCCAAAGCACTGGCAAAGGCAGTTGGCTACACTGACATAAAGAAGAGATCTTTGCT
TTCATCTATGGAGAACCATACTACGTTACACCTTCAAACTGGCAGATCGATGTATACACC
ATCGTTCGTCATTAGTACATTGAAAAGGTTCATGCCAGAAGATAGGCTTTCAAGCGTACA
TGGTATAACCCTCACTTCTGACGGGACAAGCGCTGTATTTGATGTTCCTTCAGCAGAGGT
TCAAGATTACATTCAAGGCGCGGAGAACGCAGCCGGGTTGACAATTGATGAAGTGAAGCA
ACTGCCAGCCTTGCAAGAGAGGGAGCAGTCCAAGGGTAACTTTGGTGGGTCGAGGTTTGG
CCGTGGAGGTGGTGGAAGGAGATTCGGCGGGGGCGGAGGCGGGCGATTTGGTGGTGGTGG
AAGAGGCAGGGGAGGCGGTGGTGGGAGGTTTAACAGGAGGTGAAGATCTATAAGAGTATA
ATCTATTTTTGACGGGAGTTTGAGAGATGAAAGAAGGCACAGGGAATCGTCAAAGTTTTG
ACTGCGCCGTGTATCCGGGTTTTTGTTTTGTTTTATTTGTTAGTGCTTTGCCCCCGAGAT
TATGACGATCAAGTTTGCCAAACTGAAACAGTGTAAAATATTTGATCTGATACTCAGCCA
CTGTTATGAAGGAGTATACTTCGATGTTGTGTTGTTTTGAGACATGCAGCCTCAGTTATC
AGCTCTTATAAGTACAAGTCTATTTTTGGATGCGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17914 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g34910.1	697	1e-100	protein\|DEAD-box ATP-dependent RNA helicase 7, putative, expressed
Brachypodium v1_2	Bradi4g35490.1	695	1e-103
Arabidopsis v10	AT5G62190.1	671	4e-64	\| Symbols: PRH75 \| DEAD box RNA helicase (PRH75) \| chr5:24980542-24983879 REVERSE LENGTH=671