barSeed - Barley Seed Development Database

Probe CUST_29240_PI390587928

Source Contig U35_17918

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29240_PI390587928	Hv_44K_v2	CCTTTTAAGTGTATGATGGGGCTGTTCTCACTGGCATAATAGTGGACCATTTATATTTCC	1448	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.259	1.577	1.013	0.990	0.597	0.607
Raw	633.810	678.448	392.012	587.498	128.885	140.228

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_7820.2	1052	8e-25	972 - 1031	100	60 / 60	plus
JLOC1	JLOC1_7820.1	679	8e-25	599 - 658	100	60 / 60	plus
Harvest21	ABC08025	1508	3e-25	1449 - 1508	100	60 / 60	plus	ABC08025
Harvest35	U35_17918	1508	3e-25	1449 - 1508	100	60 / 60	plus

Contig Sequence (1508 bp)

>U35_17918 1508 Hv_44K_v2
CCGGGGCCGCCTCCTCCGCGCGCGCTCCGGCCACGCCGCCGCCGTGAGGTGCCAGAGGGT
CGATCCTGTGAGGCTGAGGGCGGTGAATGGATCGCCCCCCTGCGTTCCCCTGTCCGACAG
GTCGCCGTGGACCCCTGTGACGACGCCGATTTTCGGGGACGCAAGCATCAGGAAGGACGA
CACGAGGCTGCGCATCTTCTCAGGAACCGCCAACCCCTCGCTCGCCCAGGAAATAGCAAG
CTACATGGGTCTAGAACTTGGGAAGATCAACATAAAAAGGTTTGCTGATGGAGAAATATA
TGTTCAGTTACAAGAAAGTGTAAGGGGCTGCGATGTGTTCCTTGTGCAACCATCATGTCC
TCCAGCAAACGAGAATCTCATGGAGCTACTCATCATGATTGATGCGTGTAGAAGAGCATC
TGCTAAGAATATTACTGCAGTCATCCCTTATTTCGGTTATGCCAGGGCTGACAGGAAGTC
TCAAGGTCGCGAATCTATAGCTGCAAAACTTGTAGCTAATATGATTACTGAAGCTGGTGC
AAACCGTGTCCTTGTTTGTGATCTTCATTCAAGTCAGGCCATGGGATATTTTGACATCCC
AGTAGATCATGTTTATGGCCAGCCGGTGATTCTTGATTACCTCGCCAGCAAGACAATTTG
TTCAAATGACTTGGTGGTGGTGTCGCCCGATGTTGGAGGTGTTGCCAGGGCACGCGCTTT
TGCCAAAAAACTATCAGATGCACCTCTAGCAATTGTAGATAAAAGAAGGCATGGACACAA
CGTTGCCGAGGTAATGAATCTTATTGGAGATGTTAGAGGAAAAGTGGCTGTTATGATGGA
TGATATGATTGATACGGCAGGAACTATTGCCAAAGGAGCTGAGCTGCTGCATCAAGAAGG
AGCAAGAGAAGTATATGCATGCTGTACACATGCTGTTTTTAGCCCACCAGCCATCGAAAG
ATTATCAAGTGGTTTGTTTCAAGAAGTGATCATCACGAACACTATCCCTTTGAAGGAGGA
GAAGAATTTCCCGCAGCTGACCATCCTTTCAGTCGCGAACCTTCTAGGCGAGACAATCTG
GCGTGTCCATGACGATTGCTCTGTTGGCCATGCGCCATACTCCACCTTGGATATCGATTG
AGAACGGGTGCCATAGAGGGTCGACCTGCCGTGGTGTCGACAACAACAAATACAGTTGAT
AGATGAGATGTCTAGGTGATAATGAGCAGAATGTACTCTTTCTTAATGCAGGAATAGTTG
TACAAGTGCCCCTTTTTTTTGGATGTTGTCCACTTTGTTTTGTGGAATAAGCTATGTTAG
CAGAAAAAAACGTTGACTATGCGTCCGAGTGTGATAAGTACATTAGATGGAAGTTTGAAC
TGTGTATATAGGCCCGCTTAATCCCAGCCGTTCCTTTTTTTTGACCATTTTAGATGAAAG
TTGGCCCACCTTTTAAGTGTATGATGGGGCTGTTCTCACTGGCATAATAGTGGACCATTT
ATATTTCC

Homology of Contig U35_17918 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g03540.1	397	protein\|phosphoribosyl transferase, putative, expressed
Brachypodium v1_2	Bradi3g02680.1	402
Arabidopsis v10	AT2G44530.1	394	Phosphoribosyltransferase family protein \| chr2:18383732-18385974 FORWARD LENGTH=394