barSeed - Barley Seed Development Database

Probe CUST_2922_PI390587928

Source Contig U35_481

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2922_PI390587928	Hv_44K_v2	GTACTGTATGTTGTTGTTGAACTACCAGGGGAAGAGTTTGGTGCTTTAACAACCAAAAAA	1568	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74635.1	1180	9e-22	1125 - 1179	100	55 / 55	plus	ABC06347 ABC06348
JLOC1	JLOC1_49754.1	1461	5e-22	1128 - 1182	100	55 / 55	plus
Harvest21	ABC06347	1601	3e-25	1531 - 1590	100	60 / 60	plus	ABC06347
Harvest21	ABC06348	776	8e-21	701 - 755	98	54 / 55	plus	ABC06348
Harvest35	U35_481	1639	3e-25	1569 - 1628	100	60 / 60	plus
Harvest35	U35_124	891	8e-21	518 - 579	95	59 / 62	plus

Contig Sequence (1639 bp)

>U35_481 1639 Hv_44K_v2
ATCCCCACCCACACCCACAGATCAGATCCCTCTCCTCCTCCTCCCCCTGCCCAGCTGACA
CTGACCAGCCTTCCATCCGGACAGCGTCCCACTGCCGCCGTCGCCGCCCGCCGCCCGCCG
CCATGAGCTCCTCCCACCGCCACCTCATGCGCCTGCTCGACGACCCCTTCTTCCCCTTCC
CCCCGCCACCGCCTACCTCCTCCCTCACCTCCTCCTGCCCCTTCCTCCCACCTCCACTCT
CATCCCCATTCGCCTTCCCCCACGACGACCTCCTCGACCTCTACCTCCCCGCCGACCCCT
TCTTCCTCCCACCCCCACCCCCCTTCCCCGCCCCCACACCGCACGCCTTCCTCCTCCACG
ACCTCACCGACCGCGTCGCCGCGCTCGAGCTCGCGGCCCGCGCCGCGGCCCCGCAGCCGG
CCCGCCGCAAGTACACCTACGCCGCCGCCTCCCCGGGGGGCCGCAAGGTGAAGTGGACGG
CCGAGGACAAGCCCCGCGGCGGGGGCCGGTCCCTCAAATGGGAGGCGGAGCTCGCCTCCC
CCAACGACGACGGATTCGACCGCAAGTGGAAGTGGGAGGCCAAGTCCAAGCCCGGCGCCG
GAGGCAAGACCAAGACCAAGTGGGGCACCGAGATCAAGGGCAAGGGCTCGCTCGAGCCGT
GGTCCCACGCCTACACCTGGGAGGAGGACTTCAGCGCCTCCGACGATGACGAGGATGCCG
ACTACCCGGAGGAGCGCCGCAGGCCGGAGCAGAAGAAGGAGCCCAAGAAGATCAAGGCCG
CCGCCAAGGAGGAGAAGAAGCCGGCCAGGAAGTCCGTCCACATCGAGGAGATCCCCGAGG
ACAACACCGCCGGCTGCGACGCCATCCGCAAGGCGTTTGCCATGGGGAACGGCAAGGGGA
AGGCCAAGGAGCTGTCGCCGCAGGACGCCGCGCTGCTCATCCAGATGAACTACAGGGCGC
ACCTCGCCCACCGTTCCCAGGTGCTCCGCTGCCTGCGTGATCTCGCCGTGGCCAAGGCCA
AGCTCAAGGAGCTCAGGTCCCTGTTCTACAACCTCTCCTACAGGCGCCGCCTCTCGCATG
ACCACGAGGAGCGCCAGAGGTTCTCTGAGAAGATCATTGTCCTGCTCCTCACCGTCGATG
CGCTCGAGGGACCTGACTTCATGGTGAGGACAGCGAAGAAATCTATGCTGGAGGAACTCG
AGGGCATGCTCGAGATCGTGGACCCGCAGCCACCAGGGAAGCAGAGGTCGTTCAGCCGCC
GCAAGTTTGATCTTCCAGAGGGCGGGGCGATCCCGAATGAGAAAACTGCAGGCGTGAACA
ATGCTGTCAGAGTCATCAACACTGGCAAGGGCAAGCAGTAGGCACCGCCGCGCGCCTAGT
TTAGTGGCTGGTACCATGCCCGATTGATGGAGCTTGTAGCGCCGCTTTGTCTGTGAATGG
TCCGGTTCATCTTAGATTTCCAGTACCTTTGAGATTTGAGAAGGATTGAACTTGTCGTGC
ACCATTATTCAGGATGTCGTAGCATGTAATGTATGATCCGTACCGGTACCATTTGCTTTG
GATTTGTTGTACTGTATGTTGTTGTTGAACTACCAGGGGAAGAGTTTGGTGCTTTAACAA
CCAAAAAAAAAAAAAAAAA

Homology of Contig U35_481 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g01500.3	431	9e-126	protein\|IQ calmodulin-binding motif family protein, putative, expressed
Brachypodium v1_2	Bradi1g52220.1	407	3e-138
Arabidopsis v10	None