barSeed - Barley Seed Development Database

Probe CUST_29225_PI390587928

Source Contig U35_29904

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29225_PI390587928	Hv_44K_v2	GACGCAGCCAAACCGCCGGCGGCGCCCGAGCAGCAGCAGAAGCTCCTGGAGGTGGCGGAG	129	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58692.1	387	7e-23	118 - 177	98	59 / 60	minus	None
MLOC	MLOC_58693.3	1649	7e-23	1374 - 1433	98	59 / 60	minus	ABC23446
MLOC	MLOC_58693.2	1783	7e-23	1448 - 1507	98	59 / 60	minus	ABC23446
JLOC1	JLOC1_38150.1	2480	4e-23	2147 - 2206	98	59 / 60	minus
JLOC1	JLOC1_38149.1	1876	4e-23	275 - 334	98	59 / 60	plus
Harvest21	ABC29481	189	3e-25	130 - 189	100	60 / 60	plus
Harvest35	U35_29904	189	3e-25	130 - 189	100	60 / 60	plus

Contig Sequence (189 bp)

>U35_29904 189 Hv_44K_v2
CCAGATGCTCGGGTACAGACACCATTCCGCGCTTCCAGCTCCGCTGCCTGCACATACCAC
CCCGCGCGCTTCCAACGGAGATAGATGGCCGCTGCTAAGCCAGCCTGCTCCGTTCCCGCC
AGTTCCGCCGACGCAGCCAAACCGCCGGCGGCGCCCGAGCAGCAGCAGAAGCTCCTGGAG
GTGGCGGAG

Homology of Contig U35_29904 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None