barSeed - Barley Seed Development Database

Probe CUST_29212_PI390587928

Source Contig U35_17937

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29212_PI390587928	Hv_44K_v2	ATGTCACCAGATCTTGGTTAATCTTTGCAGACAACGGCTCGCCGATCTTTGCAGTTCAAA	655	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.536	1.275	1.045	0.925	0.423	0.567
Raw	3512.607	4513.273	3269.570	4572.353	720.302	1068.479

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12097.1	1837	7e-23	1678 - 1734	100	57 / 57	plus	ABC08706 ABC08707
JLOC1	JLOC1_8093.1	1712	4e-23	1517 - 1573	100	57 / 57	plus
Harvest21	ABC08707	1182	1e-23	1069 - 1125	100	57 / 57	plus	ABC08707
Harvest21	ABC08706	874	1e-23	167 - 223	100	57 / 57	minus	ABC08706
Harvest35	U35_17937	729	3e-25	656 - 715	100	60 / 60	plus

Contig Sequence (729 bp)

>U35_17937 729 Hv_44K_v2
CTAACACCGAGTCTGATAGGAGTGGTGCCATATGCCGCAACCAACTACTATGCCTACGAC
ACCCTGAGGAAGCTCTACAGGAAGACATTCAATCAGGAGGAGATCAGCAACCTTGCAACC
CTCCTGATCGGTTCGGCCGCAGGCGCCATCTCGAGCACTGCCACCTTCCCTCTCGAAGTA
GCTCGCAAGCAGATGCAGGCAGGGGCGGTGGGCGGAAGGCAGGTCTACAAGAACGTGTTC
CATGCCCTCTACTGCATCATGGAGAAGGAAGGGATCAGCGGTCTGTACAAGGGGCTCGGG
CCCAGCTGCATCAAGCTCATGCCCGCGGCGGGGATCTCCTTCATGTGCTATGAGGCCTGC
AAGAAGATCCTGGTCGAAGCCGAGGAGTAGACTGAAGCATGCGCCGAGTCCTTCAAGAAG
AGGCGGCAGGATTAAGCCTCGTCTTTCTTTCTATCAAGAAAAGAAGATTGGATGATCAAC
TACTCATCAGAAGCCTAGGTCAAAGATTTCCCATTTGAGATGTCTGTTAGATGATGAAGT
TTTGGCCTCTAATTAGTTCTGTGCTCGAGTTGAAGTCCATTAAACAGTATTCTGACTGGC
GGAAGCAGTTTTGTCATGCTACTTTTGCTTCTGTGCTAGCCCTGTTTCTCCCTTTATGTC
ACCAGATCTTGGTTAATCTTTGCAGACAACGGCTCGCCGATCTTTGCAGTTCAAAAAAAA
AAAAAAAAA

Homology of Contig U35_17937 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g40050.1	424	2e-64	protein\|mitochondrial carrier protein, putative, expressed
Brachypodium v1_2	Bradi1g36670.1	419	1e-65
Arabidopsis v10	None