barSeed - Barley Seed Development Database

Probe CUST_2920_PI390587928

Source Contig U35_482

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2920_PI390587928	Hv_44K_v2	ATGGCCGGCCTCCTAATGCCAATTATGAGTAAGACATCATGGCAATGTTTAATCTTTATG	668	GeneList: paleturquoise MasterList: Pathogenesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.086	0.819	0.311	0.983	1.163	1.542
Raw	3489.663	2275.625	747.827	3680.883	1563.383	2241.383

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249901.1	731	2e-24	672 - 731	100	60 / 60	plus	ABC02087 ABC02088 ABC02089
JLOC1	JLOC1_42432.1	1144	8e-25	825 - 884	100	60 / 60	plus
Harvest21	ABC02088	732	3e-25	656 - 715	100	60 / 60	plus	ABC02088
Harvest21	ABC02084	759	3e-25	660 - 719	100	60 / 60	plus
Harvest35	U35_482	777	3e-25	669 - 728	100	60 / 60	plus

Contig Sequence (777 bp)

>U35_482 777 Hv_44K_v2
AAACCCACAAGAGCAAGCTCAGTCATGGGGACGATGAAGCGATGCATGGTTCCTGGCATC
CTGCTGATGCTTGCGCTGCAGGCAGCCCTGCTGGTCGCCGGCGACGAGGTGGGCTCCATT
CTCCTGCCGAGCCAGGGCCAAGGCGAAGCAGCCGCCATGGCGGCGGGCAAGAAGAGGCCG
TGGAAGTGCTGCGACCAGGCGGTGTGCACCAGGTCCATCCCGCCGATCTGCACCTGCATG
GACCAGGTCTTCGAGTGCCCGAAAACCTGCAAGTCCTGCGGGCCGTCCATGGGCGACCCG
TCCCGCCGGATCTGCCAGGACCAGTACGTCGGCGACCCAGGGCCCATCTGCCGGCCGTGG
GAGTGCTGCGACAAGGCTATCTGCACCAGGTCCAACCCGCCGACGTGCCGCTGCGTCGAC
GAGGTCAAAAAGTGTGCTCCGACGTGCAAGACCTGCCTGCCGTCCAGGTCGCGCCCTTCC
CGTCGCGTCTGCATCGACAGCTACTTTGGGCCCGTCCCGCCCCTATGCACGCCCCGGGAG
GACGTTGCCACCGGCGGTAACTAGGTACCGCATGCACGCGCGCGTTGGTCACCCGATCAA
CGCCCGGCCGTCGAGTGTCCTCCTGCCCTGCTGCAGCACCAGCAGCGTGTAAGAATAAAA
TAAAATGGATGGCCGGCCTCCTAATGCCAATTATGAGTAAGACATCATGGCAATGTTTAA
TCTTTATGAAAAAAAAAAAAAAAAATGTTTTTTCGATCTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_482 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None