barSeed - Barley Seed Development Database

Probe CUST_29203_PI390587928

Source Contig U35_29916

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29203_PI390587928	Hv_44K_v2	CAGCATGCTTTTCTGTATGTAGGGAACATTAAAGTCAATCTTGCTTGCTTGATAAATAGA	276	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.635	1.553	1.966	2.091	0.715	0.752
Raw	45.891	172.953	193.618	332.604	37.643	45.111

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373752	1707	2e-24	1633 - 1692	100	60 / 60	plus	None
MLOC	MLOC_59783.1	1241	2e-24	1134 - 1193	100	60 / 60	plus	None
MLOC	MLOC_59783.2	1228	2e-24	1032 - 1091	100	60 / 60	plus	None
JLOC1	JLOC1_38920.1	1253	8e-25	1037 - 1096	100	60 / 60	plus
Harvest21	ABC29500	337	3e-25	277 - 336	100	60 / 60	plus
Harvest35	U35_29916	337	3e-25	277 - 336	100	60 / 60	plus

Contig Sequence (337 bp)

>U35_29916 337 Hv_44K_v2
CGAAGCCGCAGTTGTTGGATACGCAGATGATCAGGCTGGTGAGTTGCCGGTAGCATTCGT
CGTACAGCGCTCCGGAAGCAAAGTGCATGAGGCCCAGATCAAAGACTTCGTCGCTAAACA
GGTCGTGCACTATAAGCGAATACACCGTGTTTTCCTTGTGGATTCCATACCGAAAAATGC
CGCGGGCAAGATCTTGCGCAAGGACTTGGCTAAGTTAGCATTGCATCGGATTAACGCCAA
ATTATAACATGTTTGGCAGGTAGAAGAAAATAGCTACAGCATGCTTTTCTGTATGTAGGG
AACATTAAAGTCAATCTTGCTTGCTTGATAAATAGAT

Homology of Contig U35_29916 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None