- Probe CUST_29202_PI390587928
- Source Contig U35_29917
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29202_PI390587928 | Hv_44K_v2 | TGTTCCTTTCTCCGGTGGCTAGCCGGCAGTCTGCGCAGCAAGAGAAGAAGAGAGAGTTCT | 34 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.016 | 0.117 | 0.808 | 1.841 | 1.633 | 2.598 |
| Raw | 3.822 | 62.980 | 356.594 | 1262.089 | 389.276 | 689.220 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_73998.1 | 889 | 7e-23 | 223 - 282 | 98 | 59 / 60 | plus | ABC10134 |
| JLOC1 | JLOC1_49295.1 | 1042 | 4e-23 | 279 - 338 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC29502 | 194 | 3e-25 | 35 - 94 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29917 | 194 | 3e-25 | 35 - 94 | 100 | 60 / 60 | plus |
Contig Sequence (194 bp)
>U35_29917 194 Hv_44K_v2 GGCAAGTGTACAACTCCTCTTCCCCCTCGTCTGCTGTTCCTTTCTCCGGTGGCTAGCCGG CAGTCTGCGCAGCAAGAGAAGAAGAGAGAGTTCTGCTGCGAAGATGGTGGCGCCCGTGGT GATCGCGTCGGCGGGGCTCGGGATGCTGGCGGGCGTGGTGATGGCGAACCGGACGACCGG GGACGGGCTGCCGG
Homology of Contig U35_29917 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |