barSeed - Barley Seed Development Database

Probe CUST_291_PI415269222

Source Contig CK125352

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_291_PI415269222	Hv_44K_v2	TTATGTGAAAGTTGCTGATCCACTGGGCTACAACGTCACCGAAATGATCGCTCCAAAGAA	744	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.134	1.422	1.257	0.829	0.188	0.168
Raw	5419.193	5700.943	4310.110	4389.673	374.926	354.102

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59505.3	1310	7e-23	925 - 984	98	59 / 60	plus	None
MLOC	MLOC_59505.4	1308	7e-23	925 - 984	98	59 / 60	plus	None
MLOC	MLOC_59505.2	1685	7e-23	1489 - 1548	98	59 / 60	plus	None
MLOC	MLOC_59505.1	2227	7e-23	1802 - 1861	98	59 / 60	plus	None
JLOC1	JLOC1_38727.1	2294	4e-23	1803 - 1862	98	59 / 60	plus

Contig Sequence (930 bp)

>CK125352 930 Hv_44K_v2
CCAGAATGCAAGCACAGACTATTACATCGTGGCAAGCCCGAGGTTTGTGAGCAGCGAAGC
TCGCTGGCGCGATGTCAATGGTGTAGCAATCCTGCAGTACTCAAACTCCAAAGGCAGTGC
TTCTGGCCCCCTCCCTGGCGCTCCAGATGATTTCTATGACAAGTACTATTCCATGAACCA
GGCAAGGACTATCAGGATGAATGTGAGTTCCGGTGCTGCACGCCCAAATCCACAGGGATC
ATTCCGCTACGGCTCGATCAACATCACGCAGACCTTTGTCTTGAAGAACGAGTCGCCCTT
GCGCATTGGCGGGAAGCGTCGAAGGACGATAAACAGGGTCTCGTACTCACCTCCCGAGAC
TCCACTGAGGCTTGCTGATCTCCACAACCTTACAGGGGTCTACGGAACAGACTTCCCCAC
AATGCCAAGCGATGTGCCACCAAGGAGGGCTTCATCTGTGCTGAATGCTTCTTACAAGGG
CTTCCTCGAGATGGTCTTCCAGAACAATGAGACCGATGTTCAGACCTACCATCTGGATGG
TTATTCATTCTTTGTAGTCGGGATGGACTATGGCGAGTGGACGCCAAACAGCAGGGGTTC
ATACAACAAGTGGGATGCCATCTCTCGCAGTACCACACAGGTGTTCCCCGGAGGGTGGAC
CGCAGTCCTGGTATCGCTGGACAACGTAGGCATCTGGAATATACGTGCCGAGAAGCTGGA
TAATTGGTACAATGGGCAAGAGGTTTATGTGAAAGTTGCTGATCCACTGGGCTACAACGT
CACCGAAATGATCGCTCCAAAGAANACTCTCTACTGTGGTCTGCTGAAAAGACATGNCAA
AAGCCACAGATACNTGAGAACAAGCAAGAAAGTCATCAGCGCATGGCCGNGGCTCGATGG
ANCACTCAGCTTTATTATCACAACCCTGTC

Homology of Contig CK125352 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g05820.1	601	3e-169	protein\|monocopper oxidase, putative, expressed
Brachypodium v1_2	Bradi3g16940.1	598	0.0
Arabidopsis v10	AT4G12420.1	587	2e-117	\| Symbols: SKU5 \| Cupredoxin superfamily protein \| chr4:7349941-7352868 REVERSE LENGTH=587