barSeed - Barley Seed Development Database

Probe CUST_2919_PI390587928

Source Contig U35_16328

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2919_PI390587928	Hv_44K_v2	TGCCTCCATGGTTGTTTCTTCTAGCTTTTCTTTACATATTTGAAATGATGTCCTACACAA	1521	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.813	1.390	1.093	0.737	0.239	0.232
Raw	9226.980	11072.743	7686.247	8160.317	931.536	990.529

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74707.2	1800	7e-23	1523 - 1582	98	59 / 60	plus	ABC05755
JLOC1	JLOC1_49812.1	1958	4e-23	1519 - 1578	98	59 / 60	plus
Harvest21	ABC05755	1606	1e-23	1522 - 1581	98	59 / 60	plus	ABC05755
Harvest35	U35_16328	1600	3e-25	1522 - 1581	100	60 / 60	plus

Contig Sequence (1600 bp)

>U35_16328 1600 Hv_44K_v2
CCCCAACCCCTCGCCGCCGCCGCATCCAAAACCCCTCCCCCCACCCCTCATCCACCTCGT
CTTCTAATGGCATCGCGGCCCATCAGGCGAAGCTGCTAGCTCGTGTCTCCCGTCTGCTTC
CCGAACAGCTTGTTGATCCACCGCAGCCCCCCATCCTCGCCGCCGCCGCCATGTCGTCCC
TCAACCAGTTCGATCTCCTTGGAGCCGACGACAACGACGATCCCTCGCAGCTGCTTGCTG
CGGCGCAGGCCGCGGCGGCAAAGAAGGCCCTGGCGAACAAGCCGGAGGCTGCGCCTGCTG
GGAAGGCGGCCCAGACCGGGGCGGCAGCCAAGTTGCCGACCAAACCCGCTCCCCCGGGAC
AGGCTGCGAGGGATGCGAGGAACGGAGGCCCACCATCACGTGGAGGATTTGGCCGTGGTG
AACCTGGCCGCGGCAGAGGAGGCGGCCGGTACGGCCAGAACCGTGACTATGGCAGCGAGA
ACACGAATGGCTACCAGGGAGGTTATGGTGGGGATGGCGCTGTAACTGGAGGCGGGGACG
GGGAGAGAGGCCCTCGACCCCCATACCGTGGAGGCGGAGGTAGACGTGGTGGTTACCGCA
ACAGTGAGTTTGGTGACGACTCTGAGAGACCGCCTCGGAGAAACTATGAGCGCCACAGTG
GGACTGGTCGTGGCCAGGGGATGAAACGTGATGGTGCAGGCCGTGGGAACTGGGGATCTT
CCACTGATGAAGGTCTTGCACAGGAAACTGATGAAGCTCTCAAAATTGAGGATAGTGCTC
CCAGCGCTGAGAAGCAGGGTGAGCAGGATGATGCTCCTCCAACTACAGAGGAGAACAAAG
ACCAGAAGGATGGTGCTGCAAAGGAGGAGGAAGAGAATGAAGAGGATAAGGAGATGACTC
TAGAGGAGTATGAGAAAATAAGGGAGGAACAGCGGAAAGCACTACTAGCATTGAAGACTG
AAGAAAGAAAGGTTGAAGTTGACAAGGACCTGCAGTCTCTGCAGCCACTGTCTACCAAGA
AAGCCAATGATGAGATTTTCATTAAATTGGGTTCTGACAAGGAGAAGAAGAAGGAAAGTA
CCGAGCGCGATGAACGTGCCAAGAAGTCTCTTAGCATCAACGAGTTCCTCAAGCCTGCTG
AGGGAGAGCGGTACTACGGCGGCCGTGGGCGTGGAAGGGGCCGCGGCGAGGGCCGTGGAG
TCAGGGGCGGGTTTGGAGGAGGATACCAGCGCGGACAGGCGGCTGCGCCATCTATCGAAG
ATCAGTCACAGTTCCCCACTCTAGGGGGGAAGTGAAGGTTGTGTGCTGTGCTGTCCTGAA
CGCCATCCTCGTTGTCTTGACTTGCCTTTAAATTTTGCCCGACGTTGGATTATTGTGTCA
CGGTTAATCGGAACAAATAATGTGTTTTTCTTTTCTTTCAGTGTGTCGTTACTCGATTTT
GTATACCGGAGTTGATCGTCGGGATTAGCCTCTAGCTAGTTTTGTAGGCTAGCTTTTCGC
GTTTGGTTAAAGGTCGTATTATGCCTCCATGGTTGTTTCTTCTAGCTTTTCTTTACATAT
TTGAAATGATGTCCTACACAAAGCAAAAAAAAAAAAAAAA

Homology of Contig U35_16328 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g52390.1	381	8e-90	protein\|plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed
Brachypodium v1_2	Bradi2g48500.1	378	2e-97
Arabidopsis v10	None