barSeed - Barley Seed Development Database

Probe CUST_29198_PI390587928

Source Contig U35_17941

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29198_PI390587928	Hv_44K_v2	CGATAAGCAGTGAGTGAGCAAGCATAATCCGATCCGAAACGGCAATTTTCGTTTAAAAAA	1318	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55396.5	4260	3e-21	958 - 1011	100	54 / 54	minus	ABC10086 ABC11892
MLOC	MLOC_55396.2	3719	3e-21	2224 - 2277	100	54 / 54	minus	ABC10086 ABC11892
MLOC	MLOC_55396.4	2291	3e-21	874 - 927	100	54 / 54	minus	ABC10086 ABC11892
MLOC	MLOC_55396.1	3880	3e-21	2379 - 2432	100	54 / 54	minus	ABC10086 ABC11892
JLOC1	JLOC1_35727.1	3644	2e-21	1350 - 1403	100	54 / 54	plus
Harvest21	ABC10086	1367	3e-25	1297 - 1356	100	60 / 60	plus	ABC10086
Harvest35	U35_17941	1389	3e-25	1319 - 1378	100	60 / 60	plus

Contig Sequence (1389 bp)

>U35_17941 1389 Hv_44K_v2
ACCCGTCACCCATCAACGCACGTACACACTCCTCCTCGGCTCCTCGCCACTCCCCCAACC
GCCCGCCCCTCCGCCATCCCTCCTCCTCCCCGCCGGGATCAAAGATACAAGATGTCAGAT
AGAGCCACACATTGGTGTTATGCCTGCCGTCGGCCAATTCGTCTTCGTGGACAAGATATA
ATCTGCCCCAACTGCAATGATGGCTTCATACAAGAGATCAGTGAGATAGGAGGCGCTTTG
AACACCTACGGTATGTTTGGGCCACGCTTCGATCGCCTAGATGGACGATTTGGAATGATG
GACGCTGTGTCTGCCCTCATGCGACGACGGATGGCAGAAATGGGCAGCAATCCTGTGTTT
GATCCTAATGCAGCCGGGGCAATCACCGCACGAGGAAGGCCGCCCTCAATTGGCCCTAGG
CTGATATTCGGCAGCAACATGCCTGCTCAAGGGAGCGACGAGGGTGGAGTAAACGTGCTT
GCCAGGGGAGGTCGCAGAATCGGCGCGGACCGTCAAAACTTCGGCAGCTTCCTCGTCGGT
CCCAGCCTCGAAGCTCTGTTCGAGCAGCTGCTACTGCAGACCGGTAACCGTCAAGGACCA
GCGCCGGCTCCGCAGTCCGCGATCGACTCCATGCCGGTGGTGAGGATAACCCGCAGGCAT
CTGAGCGATGATCCAGTTTGCCCAGTCTGCACGGAGAGATTCGAAGTCGGCTCGGAGGCG
AGGGAGATGCCGTGCAAGCACCTGTACCATGCCAACTGCATCATCCCCTGGTTGGTTCAG
CACAACTCCTGCCCAGTTTGCCGCCACTCGCTGCCGCCGCAGCGAGGATCAGACAGCAAT
GCAGCCCGCTCACGACCTTCGGTCCACAGCAGCGAAGCTGTGAGCCGTGGGGTCACCGGA
GCCGGAGCTGGCCCTGGGCCTGTCACGAGGAACGAAGTCGACGACGGAGAGAGCTCCTTC
TCGTTCCTCTGGCCGTTCGGGTCGAGCCCCGGCCCCGGCCCCGGTCCCAGTTCTTACCAG
TACGGAGGAGGCGGGGGCGAGCCCGCGGTTTACAACGACGACCCTGGCCAGATAACCTAC
TCCGAATGGCACTACGACCCCTGACAGACGCTCCCTGAGTTCCTGCTCCAAGCAGGAGAC
GTGGTGTGCAGTCTAGATATATATATATATGATGAATCTGTGGTGGATGCCTGTAGCGTT
CACCTTATGTTGGCCGGAGGCCTGGAGCTGTGTATAAATGTAAGCTGCCTCCTGGGCATT
CAACTATATTCTGTACCAGTAAAGTACAGTATATCGAACCTGTATTACTATCACACGACG
ATAAGCAGTGAGTGAGCAAGCATAATCCGATCCGAAACGGCAATTTTCGTTTAAAAAAAA
AAAAAAAAA

Homology of Contig U35_17941 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g58780.1	330	5e-129	protein\|zinc finger, C3HC4 type domain containing protein, expressed
Brachypodium v1_2	Bradi2g52600.2	329	2e-153
Arabidopsis v10	AT2G40830.2	328	7e-65	\| Symbols: RHC1A \| RING-H2 finger C1A \| chr2:17043642-17044628 FORWARD LENGTH=328