barSeed - Barley Seed Development Database

Probe CUST_29197_PI390587928

Source Contig U35_17942

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29197_PI390587928	Hv_44K_v2	GAGTAAAATAATATGCCGGGTGTGGTGTTCGTCTGTTGAGGGTGATGCAGATACGTACAA	1072	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63572.1	1379	2e-24	1158 - 1217	100	60 / 60	plus	ABC09191
JLOC1	JLOC1_41656.1	4054	8e-25	3027 - 3086	100	60 / 60	minus
JLOC1	JLOC1_41655.2	4257	8e-25	1057 - 1116	100	60 / 60	plus
JLOC1	JLOC1_41655.1	4368	8e-25	1168 - 1227	100	60 / 60	plus
Harvest35	U35_17942	1147	3e-25	1073 - 1132	100	60 / 60	plus

Contig Sequence (1147 bp)

>U35_17942 1147 Hv_44K_v2
GAACAAGAATTCTATCCCCCGGAACAACAGGCGGAGGACAAGGAGAGAGCGAGGAGCCGA
TCCGTCCCGTCCCGTCCGATCGATCGCCCGGCGGCTCTCCGGCTAGAAATGGCGCAAGAG
AGTTGGAAAGAGGCAGAGGATACGGGTGTCCACGCACCCGAGGCCCCGATACTGTGCGTC
AACAACTGCGGCTTCTTTGGCAACCGGATGACAGAGAACATGTGCTCAAAGTGTTACCGA
GACACTGCCAAGGCCAAGAGGATGGCCACTCTAGTCGAGAACAAAACTGCTGCTGCTGTT
GCATCGTCACCCACACCATTGGTGGCAGAGATGAAGGATGAAGCATCTGGCTCAGCCAAA
GAAGGCAAGCAAGTAGCCGAGGAGGAGGCGCCCAAGCCACCGAGCAACCGCTGCCTGTCG
TGCCGGAAGAAGGTCGGGCTAACGGGGTTCAAGTGTCGCTGCGGAGACACCTTCTGCTCG
ATGCACCGGTACGCCGACGCGCACGATTGCAAGTTCGACTACAAGCAGGCCGGCAGGGAG
CAGATCGCCCAGCAGAACCCCGTCGTCAAGGCTGACAAGGTCACCAGATTCTGATGGAGG
TTCTGCTGAAGGAGCCATGCTCGTTTATATTTCCTCAATGGTGATGATGATGCTTGGTCC
GTCAGGTTTACTTCAGAATTGTGTGTCTACCATCCTCCTGGGAGTGTACTTCGCCGATGA
ACCGCCTTGGACAAACACCACCAACCCATGTCCGTCCGAAGGGCCATCAACGGGCCATTG
CACCGAGTTGGCGACGCCTTCAAGGGCTGTATAATGTTGGTGTTTGTGTGGCAACATTCA
TTGGTACAGGTGCATTTCTGTTTATTTACATATATATGAATAATGTGAATGTAAATATTT
GTCCTTAACAGCATGCAGTCCAACTGATTTATCTATCATGCTCAAGGCTTGGCAGGTTTC
CATGGTCACCTGTTATAGTGTAAATCATTGTGCATTTCCGTGTGTTATGTGTTCAAATCA
GCAATACTTGGTGCGTTTTATACTGCTGAAAAGATCCACTAGAACACTGTCAGAGTAAAA
TAATATGCCGGGTGTGGTGTTCGTCTGTTGAGGGTGATGCAGATACGTACAAAAAAAAAA
AAAAAAA

Homology of Contig U35_17942 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g57890.1	161	2e-87	protein\|zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed
Brachypodium v1_2	Bradi1g06040.1	156	6e-86
Arabidopsis v10	None