barSeed - Barley Seed Development Database

Probe CUST_29196_PI390587928

Source Contig U35_17943

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29196_PI390587928	Hv_44K_v2	GTGGCGGCGTTTAGACATTCCATTATATATTGAGTACATCTGCTTTCATTTCTCAAAAAA	1535	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67381.1	3298	7e-23	2 - 58	100	57 / 57	minus	ABC05572 ABC07945
MLOC	MLOC_67381.2	3166	9e-22	1 - 55	100	55 / 55	minus	ABC05572 ABC07945
JLOC1	JLOC1_44489.1	3114	4e-23	2900 - 2956	100	57 / 57	plus
Harvest21	ABC07945	1606	3e-25	1536 - 1595	100	60 / 60	plus	ABC07945
Harvest35	U35_17943	1606	3e-25	1536 - 1595	100	60 / 60	plus

Contig Sequence (1606 bp)

>U35_17943 1606 Hv_44K_v2
AACGAAGTTGCTGAGGTTTTAGATACGTTCCATGTGTTAGCTGAACTTCCCTCTGATAGC
TTTGGTGCGTACGTTATATCCATGGCAACAGCTCCTTCGGATGTTCTAGCAGTTGAGCTT
CTGCAGCGTGAATGTCATGTGAAGACGCCACTGAGAGTTGTGCCGTTGTTTGAAAAACTA
GCAGACCTGGAAGCTGCACCAGCAGCTCTCGCACGACTTTTCTCCGTTGAGTGGTACAGA
AACAGAATCAATGGTAAACAAGAAGTAATGATTGGTTATTCAGATTCTGGGAAGGATGCT
GGCCGTTTCTCTGCTGGCTGGCAACTGTACAAAGCTCAAGAGGAGCTTATTAAGGTTGCA
AAAGCGTTTGGGGTTAAGTTGACTATGTTCCATGGACGAGGAGGAACTGTTGGAAGAGGC
GGGGGTCCTACTCATCTTGCTATATTGTCACAACCTCCAGAGACAATCCATGGATCACTT
CGGGTAACTGTTCAAGGTGAAGTCATCGAGCAGTCCTTTGGGGAGGAGCATTTGTGCTTC
AGAACGCTTCAACGTTTTACAGCTGCTACTCTTGAACATGGTATGCATCCACCAATCTCA
CCAAAACCAGAGTGGCGTGATTTGATGGATGAAATGGCCGTTGTTGCCACAGAAGAATAC
CGATCCATTGTCTTCCAAGAGCCACGATTTGTTGAATATTTCCGCCTTGCAACACCAGAG
CTGGAATATGGCAGGATGAACATTGGAAGTAGGCCATCAAAACGGAAGCCAAGTGGAGGT
ATCGAATCGCTGCGTGCGATTCCTTGGATATTTGCTTGGACGCAGACCAGGTTCCACCTG
CCAGTGTGGCTTGGTTTTGGCGCAGCATTCAAGTATGTCCTGCAGAAGGATATACGTAAT
CTTCAAACCCTTCAGGAGATGTACAACGGGTGGCCGTTTTTCAGGGTTACAATAGACTTG
GTTGAGATGGTGTTTGCCAAGGGTGACCCTGGTATAGCGGCTCTCTATGACAAACTGCTG
GTTTCTGATGATTTATGGCCTTTTGGGGAGCGTCTTCGAGCAAACTATGAAGAAACAAAG
CAGCTTCTTCTACAGGTAGCTGGGCACAAAGACCTCCTGGAAGGCGATCCGTACCTGAGG
CAGAGCCTGCGGCTCCGTGATTCTTACATCACAACGCTGAATGTCTGTCAAGCCTACACA
CTGAAGCGTATCAGGGATCCTAGCTTCCATTCACAGCCCGGGCCTCATCTTTCCAAGGAG
ATCATGGAGCCCGGGAAGTCGGCTGCCGAGCTTGTGAAGCTCAACCCGACGAGCGAGTAC
GCCCCGGGGCTCGAGGACACTCTCATCCTGACCATGAAGGGCATCGCCGCCGGTATGCAG
AACACAGGCTGAAGTGCAAACCTGAAACTGTTATGTTGTGTGAGATGATGTGGTGCAGTA
GACGCTTTTTGGCGCTTCGTTGTCTTTTATGGATGGTCCGGACCAGTTGAGCCAAACTGT
GACATTTGCCTGCTTGGCGCGGGATTTTTCTTATAGTGGCGGCGTTTAGACATTCCATTA
TATATTGAGTACATCTGCTTTCATTTCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17943 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g55350.1	925	protein\|phosphoenolpyruvate carboxylase, putative, expressed
Brachypodium v1_2	Bradi4g27910.1	969
Arabidopsis v10	AT1G53310.1	967	\| Symbols: ATPPC1, PEPC1, ATPEPC1, PPC1 \| phosphoenolpyruvate carboxylase 1 \| chr1:19884261-19888070 REVERSE LENGTH=967