barSeed - Barley Seed Development Database

Probe CUST_29191_PI390587928

Source Contig U35_17948

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29191_PI390587928	Hv_44K_v2	GTTTTGGACCTTGTCCATTCAAGTTTCCATCTTCACTCTTGGAGGGCAATACATAAAAAA	2046	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.898	2.217	1.248	0.650	0.428	0.309
Raw	38.433	71.584	34.295	30.858	5.164	3.655

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10924.1	967	2e-24	844 - 903	100	60 / 60	plus	ABC11033
MLOC	MLOC_10924.3	966	2e-24	843 - 902	100	60 / 60	plus	ABC11033
Harvest21	ABC11033	1173	3e-25	1103 - 1162	100	60 / 60	plus	ABC11033
Harvest35	U35_17948	2117	3e-25	2047 - 2106	100	60 / 60	plus

Contig Sequence (2117 bp)

>U35_17948 2117 Hv_44K_v2
GGTTACGCATAGAAGAATTTATCCACTCTTGAGAGAACGTATGAATGTGCTGAATCCTTA
TGTGCGACAATTTTTGGTGGGGTGGATCACAGTTTTAGACAGTGTGCCTGATATTGACAT
GCTTGGTTTCCTTCCTGATTTTCTTGATGGTTTATTTAATATGCTGAGTGATTCCAGTCA
TGAGATAAGGCAGCAAGCAGATGCAGCACTTTCAGAGTTTCTGCAGGAAATAAAAAATTC
ACCAAATGTAGATTATGGTCGTATGGCTGAAATTCTTGTTAGGAGGGCAGGCTCTCCTGA
TGAGTTCACTCGTTTGACATCTATCACATGGATCAACGAGTTCGTGAAGCTTGGTGGGGA
ACAACTAGTCCCTTACTATGCAGACATCTTGGGAGCTATCTTACCATGCATCTCTGACGA
AGAGGAGAAAATTCGAGTGGTTGCACGTGAAACTAATGAGGAGCTTCGAGCTATAAAAGC
TGATCAAACCGAGGGATTTGACATTGGAGCAATTCTCGTGATCGCAAAGAGAGAGTTGAA
TAGTGAACATGAAGCCACTCGAATTGAGGCGTTGCACTGGTTTTCCACTTTGCTAGTTCG
AGGTCGTGCTGAGTTCTCGGCGTACCTGGATGGAATTTTTGAACCACTTCTAAATGCACT
CTCCGATCCTTCAGATGCGGTTGTCCTTTTAGTGTTGGAAGTTCATGCACGCATAGCTGA
AGAGTATCATCACTTCCAACATCTTATGTCTTACTTAATCCACACTTTCCACAACAATCA
TGTTCTTCTGGAGAAGCGTGGTGCTTTGATAGTTCGTCGACTTTGTGTTCTTTTGGGTGC
TGAAAAAGTTTATCGAGAGTTTTCTACTATTCTTGAGACTGAAGGTGACCTTGATTTTGC
CTCCACCATGGTTCAGGCATTGAATTTGATTTTGCTCACATCTACTGAACTTGCGGGGTT
GCGGTCTCTTCTTAAAAAGTCATTGGTGGATACTTGGGGGAAGGACTTATTTCTATCTTT
ATACTCTTCTTGGTGCCACTCTCCAATGGCTACAATCAGCTTGTGCCTACTTGCTCAGGC
ATACAATCATGCGAGCTCTGTTATTCAGTCTCTGGGAGAAGAAGACATAAATGTGAAGTT
TCTGGTGCAGTTGGATAAATTGATCCGTCTATTAGAGACTCCAGTATTTGCTTACCTGCG
TTTACAGCTTCTTGAGCCTGGAAAACACACCTGGCTACTGAAAACACTTTACGGTCTCCT
GATGCTCTTGCCTCAGCAAAGTGCAGCCTTCAAGATCTTGAGGACTCGACTGAAGACAGT
GCCTTTCAGTGAAAATCTCAAGCGCACATCTTCTGCAAATCCATATTCTCAGATTCTACA
AGTGACGGAAGATGGCAACCGAAATCAAGATGCACCAAACTATAGTGCAATCGATTTTTC
ATCTTGTCTCCAGCAATTTGGGAGCATGCAACAGCAGCACCGAAACCATTTGAAGAATCA
ACTGCAATCTCAAAAATCTGCTCCGGGAGTAGTATTATCGCAGGAGATTCAAAGATATGA
AGAATCAAATTCCTCCTCAATACCAGAGATAAGCAGGCCCCCATCTAGAGCACCCAAAGC
CATTTCATGATGCACATATGGTTGCTTGTGATGTATGGTACGTTTGCAGGACACATCGTC
ACAAATTTGTTGGGGCTTGGTTGGTCTCCTTTAGTTTTTTCCAAAGGAGGTTGCATGGGG
GGGTACATAGAGTGTAATCTTTTTGTTTGGTTCCTAGATTTTGTCATGGGACGGCAATTA
TTTGTTGGAGAAAGCTCGTTTCCATTCTCCCTTTAGTGATTCTTATTTTATTTTCTTAGA
TGTTCTACTGCTCATCTGGTTTCTGTAATTTTTCAATTGAAGGCCATATGAGCATAGTAG
TCTCTGGAGATATGTTACAACTGTTCTGCCTACCAATCTCCAATAAATCTAGCGATGTGG
TGTAAATTTCTGTCTCTTCCTTGGTTGGCTTGTTATATACGTGACCTTTTGCTATCAAAC
ATGCATGTTTTGGACCTTGTCCATTCAAGTTTCCATCTTCACTCTTGGAGGGCAATACAT
AAAAAAAAAAAAAAAAA

Homology of Contig U35_17948 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g12300.1	712	protein\|HEAT repeat family protein, putative, expressed
Brachypodium v1_2	Bradi1g69520.1	711
Arabidopsis v10	AT2G01690.2	744	ARM repeat superfamily protein \| chr2:309144-313499 REVERSE LENGTH=744