barSeed - Barley Seed Development Database

Probe CUST_29187_PI390587928

Source Contig U35_29923

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29187_PI390587928	Hv_44K_v2	ATCGCTGTGCGTTTGATCGATCGTTTGACATTTGCGTTTACCTGTAGAGACCTCTAGACA	286	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6208.1	652	2e-24	480 - 539	100	60 / 60	plus	ABC09843 ABC09844 ABC18182
Harvest21	ABC29511	346	3e-25	287 - 346	100	60 / 60	plus
Harvest35	U35_29923	346	3e-25	287 - 346	100	60 / 60	plus

Contig Sequence (346 bp)

>U35_29923 346 Hv_44K_v2
GGAAGGCGCTGGTGTACGTGCCGGCGAACGAGACGATGCGGTCCCTGCGGGCGCTGGAGC
GGCGGCTTGGGTCGCTGGGATGGGAGCGCTACTACGAGGACCGCGCCGTCGTGCAGCTCC
ACCGCCGCGACGGCAGCGTCGACCTTATCACGCTCCCGCGAGACTTTGCGCGGTTCCGCT
CGATCCACATGTTCGACGTCGTCGTCAAGAACCGAGGCCACTTCAGGGTCGTCGACCTCT
AAGCATGCGCACCGGCCGGCCAGTCAAGCTTACAAGGTGTGTGTTAATCGCTGTGCGTTT
GATCGATCGTTTGACATTTGCGTTTACCTGTAGAGACCTCTAGACA

Homology of Contig U35_29923 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None