barSeed - Barley Seed Development Database

Probe CUST_29186_PI390587928

Source Contig U35_29924

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29186_PI390587928	Hv_44K_v2	TGTCACCGCTCTCAACACAACTTACGACGAATTGGAAAGAATATTACCCGTGATTCTCGG	161	GeneList: lightcyan1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.137	0.318	0.656	1.661	1.530	1.380
Raw	2.862	14.652	33.273	117.190	42.942	42.034

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_37165.1	1921	6e-21	769 - 821	100	53 / 53	plus
Harvest21	ABC29513	262	3e-25	162 - 221	100	60 / 60	plus
Harvest21	ABC08085	1290	2e-21	114 - 166	100	53 / 53	plus	ABC08085
Harvest35	U35_29924	262	3e-25	162 - 221	100	60 / 60	plus
Harvest35	U35_3427	1290	2e-21	114 - 166	100	53 / 53	plus

Contig Sequence (262 bp)

>U35_29924 262 Hv_44K_v2
GTTCACCATGTAGAAGGTGGTTCCGGCAAAGGCCAGAGGCTGCACATCATATGCAGTATC
GACGCCTCGGATGGCGCAGGGTTCGTCCCTTATCAGTCCTTCTATCTTGGTGGGGGAGGA
AGACAGACGTCAGTGCTGGCCGGCTTCGAGCCAAAGATTCTTGTCACCGCTCTCAACACA
ACTTACGACGAATTGGAAAGAATATTACCCGTGATTCTCGGGCCGGAGCTCGCGGCCGGG
TTGGGCGTCCCTTTGAAGGAAT

Homology of Contig U35_29924 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None