barSeed - Barley Seed Development Database

Probe CUST_29185_PI390587928

Source Contig U35_29925

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29185_PI390587928	Hv_44K_v2	AACGAGCTCTCTCCGATGACCCATGACATGCCGGGACAGGTGAGCTTCGCGTACAACGGC	35	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3638.3	2350	2e-24	1630 - 1689	100	60 / 60	plus	None
MLOC	MLOC_3638.1	1257	2e-24	694 - 753	100	60 / 60	minus	None
MLOC	MLOC_3638.2	2207	2e-24	694 - 753	100	60 / 60	minus	None
JLOC1	JLOC1_2185.1	2237	8e-25	1450 - 1509	100	60 / 60	plus
Harvest21	ABC29515	216	3e-25	36 - 95	100	60 / 60	plus
Harvest35	U35_29925	216	3e-25	36 - 95	100	60 / 60	plus

Contig Sequence (216 bp)

>U35_29925 216 Hv_44K_v2
GCGGAGGCAACCACCAAGCCCATCGGCACGTCCAGAACGAGCTCTCTCCGATGACCCATG
ACATGCCGGGACAGGTGAGCTTCGCGTACAACGGCGGTGGGCTGGCCGCGCACCACCACC
ACCACCACCACAGCATGGCACTGTCACACCCCCATCAGCAGGTCGAAGGCGGCGCCGGAA
CATACGGCGGCGTCTCCCTTACCCTTGGCCTCCACC

Homology of Contig U35_29925 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None