- Probe CUST_29184_PI390587928
- Source Contig U35_29927
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29184_PI390587928 | Hv_44K_v2 | ATTTTGGTCATAGCCACAACCTTGTTGTCCTTTTCAACTACACAAGGGGCGTGCTTAGTG | 60 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.769 | 3.273 | 4.285 | 3.179 | 0.374 | 0.156 |
| Raw | 175.862 | 1227.709 | 1359.065 | 1652.364 | 64.263 | 29.513 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_21404.1 | 356 | 2e-24 | 89 - 148 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_14851.1 | 466 | 8e-25 | 89 - 148 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC29519 | 179 | 3e-25 | 61 - 120 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29927 | 179 | 3e-25 | 61 - 120 | 100 | 60 / 60 | plus |
Contig Sequence (179 bp)
>U35_29927 179 Hv_44K_v2 GCTTGCTAACCCGCCATGGCAATTGTCAAGAGAAATACAAGTGTTGTATGCTTGGCCTTG ATTTTGGTCATAGCCACAACCTTGTTGTCCTTTTCAACTACACAAGGGGCGTGCTTAGTG GCACCGGAATGCTCAGGTCCCTACCCAAATGTAATTTGCGGTGAGTTATGCGCTCGTTA
Homology of Contig U35_29927 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |