barSeed - Barley Seed Development Database

Probe CUST_29182_PI390587928

Source Contig U35_29929

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29182_PI390587928	Hv_44K_v2	ATTCGAAGGTGCTTGATGGAATGCGGACAAGACAAAGTTAGAAAACCGAGAAGAGCCGAA	205	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60150.1	399	2e-24	131 - 190	100	60 / 60	plus	None
MLOC	MLOC_60147.1	1335	2e-24	1067 - 1126	100	60 / 60	plus	None
JLOC1	JLOC1_39198.2	1265	8e-25	1065 - 1124	100	60 / 60	plus
JLOC1	JLOC1_39198.1	1504	8e-25	1067 - 1126	100	60 / 60	plus
Harvest21	ABC29522	373	3e-25	206 - 265	100	60 / 60	plus
Harvest35	U35_29929	373	3e-25	206 - 265	100	60 / 60	plus

Contig Sequence (373 bp)

>U35_29929 373 Hv_44K_v2
GGATTTGTCTACTTCTCTACCATGGAAACGCTCCTTGATGGTCATAATCCTAGTTGGTTC
ATGTATCTATGCATGGAGACAGGGGAGCTCTCCACGCTCTTTCAGAGGAGATTTGACGGC
CATCCCCATCCCTACATCATGGCATGGCCTCCTTGTTTGATAGACAACCAGGTGCACCCT
CAATAGACAACCAGGTGCACCCTCAATTCGAAGGTGCTTGATGGAATGCGGACAAGACAA
AGTTAGAAAACCGAGAAGAGCCGAAGTGGGGGGTAGAACTGCTTGGAGAAGCGGGAAATG
AACTCATCAGGGCAACTAAAGATGGCGGGGCAACGTGAAGTTGATTGGAGGTCGTCTTGC
AAACCGAATACCT

Homology of Contig U35_29929 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None