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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_2917_PI390587928Hv_44K_v2GGGTGGGCCCATAAGACACAACTTCACTCAATGTGATTTGTACGCTCTCTCAATAAAAAA6GeneList: orangered4
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.6823.3121.1930.8790.5450.640
Raw 39.39278.13823.27427.4945.1556.745



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC431685553e-257 - 6610060 / 60minus
Harvest35U35_1632911133e-257 - 6610060 / 60minus



Contig Sequence (1113 bp)

>U35_16329 1113 Hv_44K_v2
TTTTTTTTTTTTATTGAGAGAGCGTACAAATCACATTGAGTGAAGTTGTGTCTTATGGGC
CCACCCCATGTTCAAATTACACTTGTTTCAACAAAAGCTCCCCCTAAAATTTTCTAGTAA
TATAAAAGAAGGTAATCTGCAATTTTGGCATGAAATAAATGCACCTTGCGGATAACAAAA
TAACAAATAAAAAAAATGAGGTAACAATATCACTGACACTATACTTACCACTCCCACTCA
TACACAATAGATAGACTGCTAAACCGTAGAGTGTGACAAAGTAGTACTCCTCGTAAGTAT
CTAAAGGATCTTATATTTCTTTACAGAGGGAGTAGCAGATTTCTATGAACTAAGTATATG
GACGCGTTCGGAACCTCTCCAAACCTGGAACTCCGCTCCACGTGAGGAGCTCGATTTAAA
CGACTCCTCAAAATTGTGTTGCCGCTCCCTCCGCTCCAAGAGCTGCAGTTGCGGAGCGGA
GAGGAGCCGAACAGGGGCTATATGTGGATCACCGATCACATGTACATAAAAGTAAGTAGA
TGTCAACACAAACTTAGTAGCACCAGCGTCCAACCATCTAATTGCACAACTTGCTGAATC
CAGCTGCAAGTTCCCTTGGGACGTGCATGACCTCCTTCCTAGCCCCCATTTGTCAAACTT
CTCCAACTGCAGGACATCACATCAGAGGTTTGAGCGGCCGCTGGGAAAATCCAATTTGTG
ATACTCCTGAACATCGAGATCGAGTTACATGGAAACCTACACCACCTAAATATCCACAAT
CAAATACTATCTCTGTTCATGTCAACCTTTTTTACGATTCGATATTTGCCCTACAACCAT
TCAGGTTTCTTTGAGTCTTTGCAGTCTTATCCTATCCTACCACGACCATCCTAGCTAGTC
CGCTAGTAATCACCACCGCGAGCGGCCGCTTTTTTGAAAAGAAAAACACATTATTTGTTC
CGATTAACCGTGACACAATAATCCAACGTCGGGCAAAATTTAAAGGCAAGTCAAGACAAC
GAGGATGGCGTTCAGGACAGCACAGCACACAACCTTCACTTCCCCCCTAGAGTGGGGAAC
TGTGACTGATCTTCGATAGATGGCGCAGGCGCC



Homology of Contig U35_16329 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None