barSeed - Barley Seed Development Database

Probe CUST_2916_PI390587928

Source Contig U35_484

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2916_PI390587928	Hv_44K_v2	AAAGAAAATGCAAGTTTTCTATGGTGTTCTCCTGCAGTACTTTGCAGTTTTAGCTACTCA	1778	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.797	1.198	1.709	0.863	0.603	0.514
Raw	21.743	23.166	27.801	21.844	5.019	3.271

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55271.1	3229	2e-24	1598 - 1657	100	60 / 60	minus	ABC21628
JLOC1	JLOC1_35637.1	3357	8e-25	1687 - 1746	100	60 / 60	plus
Harvest21	ABC52401	646	3e-25	585 - 644	100	60 / 60	plus
Harvest35	U35_484	1838	3e-25	1779 - 1838	100	60 / 60	plus

Contig Sequence (1838 bp)

>U35_484 1838 Hv_44K_v2
TCGTTTTCTGTTGGGGGGCTGGACGAAGCAAACGGTGGCAGCCCATAGCGGGGGTGTTAC
GCATAACACACCTCTCCTCGCGCAGAGCCACCACCCCCGCCGCCGCCGCCCGTCCCGTCG
CGCAGCCGCCTCGCCGCCGCCCCCACGACGTCGCGCTCCGTCTCGGCCATGGCGAAGACG
AAGCCGATGGCAGCTGGCGCGGCCTCGGCGGACAAGAAAACGAACAAGAAGAAAGGCAAG
GGCACTATGAAGGGGAGGAACGGCCCGGCGGCCGTGGCCATGAAGGCGCGCGGGGCCGCG
GCGGCGGAGCGGAGCAACCCCTTCGAGGCCATCTGGTCGCGCCGCAAGTTCGACGTGCTC
GGCAAGAAGCGCAAGGGCGAGGAGAGGCGCACCTCCCGCTCCCGCTCCGACGCTGTCCAC
AAGAGGGAGAACACCCTGCTCAAGGAGTTCGAGCAGAGCGCCAAGTCGTCCGTCTTCCAT
GACCGGCGCATCGGCGAGAGGGACGAGACTCTGCCCGAGTACGACAAGGCCATCCTCCGT
CAGCAGCGAGAGCACATGGCAAAGTGAACGAGCAGCAAATACAATCTGCCCGACGAGGAG
GATGACGAGGATCCTCACACACTTTTGGGAAATGACGATTTCAATGAAGAGGTGCCTATC
GGTGACGACAGTGATGAAGAAGGTAACACGCTCTCAAAGAAGCGCTTATCTCTCCAAAGT
AGTGATCTCCCTTCAGAAACTGATCTGCCCGGAGAAACACATGGTCACAAGAGCAAAAAG
GAAGTTATGTCAGAGATCATTTTGAAGAGTAAATTTTACAAGGCCCAAAAAGCCAAGGAA
AAGGAAGAGGATGAACATCTTGTTGACAAGTTAGATAGTGATTTTGCATTGCTGGCCCAG
ACGCCAGCACTTCTATCCCTGACCGAGTCAGCTAGAGTGAACACACATAAAAACAATTCA
AGTACAATCCATAAAGATTCATCTGGTCTGACCGGAAAGGAGATTTTCAATAAGGAAAAG
CCAGACGCATACGACAAACTGGTGAAAGAAATGGTGATGGATCAACGTGCTCGCCCGTCA
GACAGGACAAAAACCCCAGAAGAACTAGCTCAGGAAGAAAAAGAACGTCTTGAGAAGTTG
GAGAAGGAACGTCACAAGCGGATGCTTGGAACCGCTGAGTCCTCTGATGAAGAAGATGAT
GATAGCGAGGATGATGATCATCGTATGAGGGCGGATAACTCAAAACCTATATCTGGCGAT
GATCTTGGTGATTCCTTCTCTTTTGACGAGCCAACAAAAGGGAAAGGTTTGGTTGACGAA
ATTTATGAGAGGGAGGGTAGAAAGATAGGTGAAGGTTTAGCATCTGATGATGAAGGAAGT
GATGACAGTGGTGAGGATGAGGATGAGGATGATGAAGAAGATGCTGGTGATGAAGAGGAT
TCAAGTGATAATGACTTCCGTAATATGCCGGCAAGGGACTGGGAGCAAAGTGACGACGAT
GAGGTTGCTGTAGAAGAAGATGAGAAGGATGATGTCAAAGATAAAGAACAAGCTATTGGG
GACAAAGTTATGAAAACAAATGCACAAAATTTGAAGACAGTATCTAATGCAAAGCAAAAA
CCGCATGGCAAGGATGAAGATCTTCCTTTTGTGATAGAAGCACCAAATAACTTACAAGAT
CTATGCTCTTTGGTAGATGGTCGCTCAGAAACTGAAATAGCTGAGATTATAAGCCGGATA
CGTACTTGCAATTCAATAAGGCTTACCACCTGAAACAGAAAGAAAATGCAAGTTTTCTAT
GGTGTTCTCCTGCAGTACTTTGCAGTTTTAGCTACTCA

Homology of Contig U35_484 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g40110.1	930	9e-149	protein\|nop14-like family protein, expressed
Brachypodium v1_2	Bradi1g15110.1	940	0.0
Arabidopsis v10	None