- Probe CUST_29168_PI390587928
- Source Contig U35_29933
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_29168_PI390587928 | Hv_44K_v2 | GGGCATATATTACGCTGTAGTATATCAATATATCATATGCGACTGGAAACTTCTGCAAAA | 383 | GeneList: yellow MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 3.128 | 3.211 | 1.338 | 0.794 | 0.376 | 0.392 |
Raw | 62.743 | 103.663 | 36.886 | 33.825 | 4.326 | 6.171 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK369723 | 1678 | 3e-22 | 1623 - 1678 | 100 | 56 / 56 | plus | ABC29527 |
JLOC1 | JLOC1_27314.1 | 745 | 8e-25 | 652 - 711 | 100 | 60 / 60 | plus | |
Harvest21 | ABC29527 | 456 | 3e-25 | 384 - 443 | 100 | 60 / 60 | plus | ABC29527 |
Harvest35 | U35_29933 | 456 | 3e-25 | 384 - 443 | 100 | 60 / 60 | plus |
Contig Sequence (456 bp)
>U35_29933 456 Hv_44K_v2 GCACTGGGCCTGTCGAATCAGCCACGGCTGATGGGTTCCCAGCGAAAGAAAGAGTAGGCG TCAGGGCCGACCACCGAGGGCTGCTGTGTGATGAGAATGTGTTCAAGCTTCTGAAGAAAT GGCTCGGCGTAAGCGAGAACGCACGGACTAGGGTGATGAAATCGCAAATTGCGGACATGC TCCCAGAGAGGATCCCGGACCAGGTCAGTCTCTGATAGATATGGCATCGATTTCTTCGAG GGAACGGTTATTTTGGTCCTTTCCCTTGAAGAGACGGGCACGCAGATGTACTGGTAACTG TGTACAAAGTTTATCTAGCGTGTGGAACAGGGGCAATTCAAAATCGCACCTACGAGGTCC GAAAACATTGTGAAACACTTCATGGGCATATATTACGCTGTAGTATATCAATATATCATA TGCGACTGGAAACTTCTGCAAAAAAAAAAAAAAAAA
Homology of Contig U35_29933 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |