barSeed - Barley Seed Development Database

Probe CUST_29164_PI390587928

Source Contig U35_50184

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29164_PI390587928	Hv_44K_v2	TAGCAGTAATGTGGAAGAAGATTTGGACAGAGCAGGCCTTTTGGATATTCCTGCTACTGC	528	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11701.3	4462	2e-24	1339 - 1398	100	60 / 60	minus	ABC17975
MLOC	MLOC_11701.1	4726	2e-24	1474 - 1533	100	60 / 60	minus	ABC17975
MLOC	MLOC_11701.2	4664	2e-24	1460 - 1519	100	60 / 60	minus	ABC17975
JLOC1	JLOC1_7784.7	4634	8e-25	3088 - 3147	100	60 / 60	plus
JLOC1	JLOC1_7784.6	4616	8e-25	3070 - 3129	100	60 / 60	plus
JLOC1	JLOC1_7784.5	4630	8e-25	3084 - 3143	100	60 / 60	plus
JLOC1	JLOC1_7784.4	4640	8e-25	3094 - 3153	100	60 / 60	plus
JLOC1	JLOC1_7784.3	4636	8e-25	3090 - 3149	100	60 / 60	plus
JLOC1	JLOC1_7784.2	4209	8e-25	2663 - 2722	100	60 / 60	plus
JLOC1	JLOC1_7784.1	4212	8e-25	2666 - 2725	100	60 / 60	plus
Harvest21	ABC52227	610	3e-25	529 - 588	100	60 / 60	plus
Harvest35	U35_50184	610	3e-25	529 - 588	100	60 / 60	plus

Contig Sequence (610 bp)

>U35_50184 610 Hv_44K_v2
CAAAAATGGCCAGGCATCACAGAATAAACCAAATCAGTCTGCTGGTGATATCAAACTTGA
CAAAAGAAAATGGGCCCTTGAGATCCTGGCAAGGAAAAATGCCAGCTCTATTGCTAGCAA
AGATCAAACAGAAGGCACTGACGATCTCAGCACGAACTACCCTTTATTAGCAAAACTTCC
CGTGGATATGAGGCCACAGCTCACAGCTGGCCGTCATAATAAAGTTCCTATGTCAGTTAG
ACAGGCACAACTTTACCGCATCTCCGAGCATTATCTGCAGAGAGCAAATTTGGATGTTAT
TCGGAGATGTGCAGATACTGAATTGGCTATTGCCGATGCTATCAATGTAGAAAATGATAT
TTACGGGAAGTCCAGTAGCAAATCAGTTTATGTGAATCTTTGCTCTCAGGCTACTCGCCA
GTCTGCCAAGGCAAAACCTGAGAATGATGCCTCAGTTCTAACTGAAAAGGCTGAAGTTAG
CAGCGATTTGATATCACAACATGTTACAACTGAAAGTACCTATAGTGCTAGCAGTAATGT
GGAAGAAGATTTGGACAGAGCAGGCCTTTTGGATATTCCTGCTACTGCCGGACAAACTGA
TAAGAGTGAA

Homology of Contig U35_50184 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g10700.1	1197	2e-83	protein\|expressed protein
Brachypodium v1_2	Bradi2g48387.1	1268	2e-95
Arabidopsis v10	None