barSeed - Barley Seed Development Database

Probe CUST_29160_PI390587928

Source Contig U35_50190

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29160_PI390587928	Hv_44K_v2	AATGACTGCCTGGATACATAATGAATTGCCCACGGCATTCCAATGGAGAATCCTTAAGCT	94	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.575	1.813	1.311	0.913	0.246	0.208
Raw	235.881	429.108	263.311	287.646	27.213	25.048

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361376	3015	7e-23	183 - 242	98	59 / 60	minus	ABC10648
JLOC1	JLOC1_8939.1	1600	3e-24	1507 - 1565	100	59 / 59	plus
Harvest21	ABC52446	566	3e-25	82 - 141	100	60 / 60	minus
Harvest21	ABC52233	585	3e-25	95 - 154	100	60 / 60	minus
Harvest35	U35_50190	585	3e-25	95 - 154	100	60 / 60	minus
Harvest35	U35_27375	567	1e-24	82 - 140	100	59 / 59	minus

Contig Sequence (585 bp)

>U35_50190 585 Hv_44K_v2
AGAAGCACTGAAACCCTCACGGCGCGCGGTGAGGCGGCCGCGGCGGAAGGAGAGCTAGCG
CCTAGCGCCGAGACCACCTCCTATTCGACGCCTGAGCTTAAGGATTCTCCATTGGAATGC
CGTGGGCAATTCATTATGTATCCAGGCAGTCATTGGGATCCTGGTTCTGATGGAGCTGTG
CGGCCATATCCAGCCAGCGGTGCCGCGGCGACCCCTCTCTCATTCAGCAAGCACCTGAAG
TGTGCCAATCTTGCAGTGACCGCCGTGGGGTTCTTCGCCAGCCTCTCAACCGGAGTCCAC
AGCCGCTCTTCAACAAAATAAATGAATTTGTGAGTCTCAAAGCAACATGAATGGAGAGGT
AGCTGATGGCCACAATGACGGATATCCAACACCCCTGAAGCAATAGAAATATACCAGATG
CTGAATTTCAGGCAGGCTTGATGTTATATGCATTTTTTATACGTTGCACTTATAGTTAAA
TTCTACTATGTGGTTTCAAACAATAATAGTGCTAGTATTCAGTACAACAAGAACAATTCT
ATTTGTGTCAGTTAAACTTGTAGTCCACGGAGCATATTCTAGAGG

Homology of Contig U35_50190 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None